Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000197308 |
| Gene: | GATA3-AS1 | Gene type: | lncRNA |
| Strand: | - | External links: |
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| Genomic region: | chr10:8050450-8053484 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_125200345 | chr10:7941435-7957216 |
Sample_02_1252 | Bone marrow | RS4_11_DMSO_10h | 345 | 7 | 441 | 22 | 1 | 62 | 0 | TAF3,GATA3-AS1 |
| SE_02_125000343 | chr10:7942525-7957324 |
Sample_02_1250 | Bone marrow | RS4_11_AZD1775 _4h | 343 | 11 | 407 | 21 | 1 | 60 | 0 | TAF3,GATA3-AS1 |
| SE_02_125100465 | chr10:7944714-7955963 |
Sample_02_1251 | Bone marrow | RS4_11_AZD1775 _10h | 465 | 8 | 305 | 14 | 1 | 48 | 0 | TAF3,GATA3-AS1 |
| SE_02_124900434 | chr10:7945141-7956973 |
Sample_02_1249 | Bone marrow | RS4_11_DMSO_4h | 434 | 8 | 331 | 16 | 1 | 39 | 0 | TAF3,GATA3-AS1 |
| SE_02_098900314 | chr10:7987234-8076184 |
Sample_02_0989 | Kidney | kidney cortex_WT | 314 | 23 | 2594 | 66 | 29 | 682 | 1964 | GATA3-AS1,GATA3,TAF3,KIN |
| SE_02_104602395 | chr10:8014669-8062154 |
Sample_02_1046 | Peripheral blood | CD4+ cells_CTCL1145 | 2395 | 12 | 1488 | 41 | 16 | 513 | 1426 | GATA3-AS1,GATA3,TAF3 |
| SE_02_075300007 | chr10:8019246-8080171 |
Sample_02_0753 | Embryo | ES-derived progenitors_FG type | 7 | 16 | 1919 | 50 | 27 | 575 | 1693 | GATA3-AS1,GATA3 |
| SE_02_107400194 | chr10:8026437-8066354 |
Sample_02_1074 | Lymphoma | BC-1 | 194 | 12 | 1273 | 40 | 23 | 493 | 1420 | GATA3-AS1,GATA3 |
| SE_02_146400113 | chr10:8026768-8075273 |
Sample_02_1464 | Ovary | CAOV4 | 113 | 12 | 1536 | 43 | 27 | 549 | 1677 | GATA3-AS1,GATA3 |
| SE_02_055300254 | chr10:8033215-8053228 |
Sample_02_0553 | Other | HSSY2 shCt | 254 | 4 | 634 | 24 | 8 | 262 | 590 | GATA3-AS1,GATA3 |
| SE_02_063500064 | chr10:8034058-8052792 |
Sample_02_0635 | Synovial sarcoma | HSSYII_Untreated | 64 | 11 | 592 | 22 | 8 | 261 | 531 | GATA3-AS1,GATA3 |
| SE_02_110900242 | chr10:8039591-8064082 |
Sample_02_1109 | Brain | SK-N-FI | 242 | 7 | 775 | 33 | 18 | 371 | 1387 | GATA3-AS1,GATA3 |
| SE_02_106300141 | chr10:8044753-8062260 |
Sample_02_1063 | Brain | CLB-GA-control | 141 | 4 | 564 | 32 | 15 | 250 | 1339 | GATA3-AS1,GATA3 |
| SE_02_136700557 | chr10:8044815-8058576 |
Sample_02_1367 | Pancreas | Capan1-untreated | 557 | 4 | 422 | 25 | 10 | 196 | 1208 | GATA3-AS1,GATA3 |
| SE_02_054400201 | chr10:8044930-8059237 |
Sample_02_0544 | Brain | Kelly_ResVeh | 201 | 4 | 452 | 25 | 10 | 216 | 1339 | GATA3-AS1,GATA3 |
| SE_02_054000079 | chr10:8045221-8062112 |
Sample_02_0540 | Brain | SK-N-BE_2_-C_PI3K_engineered | 79 | 7 | 548 | 31 | 14 | 248 | 1339 | GATA3-AS1,GATA3 |
| SE_02_084500006 | chr10:8045297-8062367 |
Sample_02_0845 | Mammary gland | MCF-7_DMSO_sgARID1A-2_KO | 6 | 7 | 550 | 32 | 15 | 249 | 1339 | GATA3-AS1,GATA3 |
| SE_02_125800682 | chr10:8045301-8062876 |
Sample_02_1258 | Liver | Pancreatic cancer cells derived from liver metastasis | 682 | 3 | 568 | 32 | 16 | 251 | 1339 | GATA3-AS1,GATA3 |
| SE_02_084400023 | chr10:8045305-8061960 |
Sample_02_0844 | Mammary gland | MCF-7_DMSO_sgARID1A-1_KO | 23 | 9 | 538 | 31 | 14 | 248 | 1339 | GATA3-AS1,GATA3 |
| SE_02_067000109 | chr10:8045382-8061592 |
Sample_02_0670 | Mammary gland | breast cancer FA | 109 | 7 | 529 | 31 | 14 | 241 | 1339 | GATA3-AS1,GATA3 |
| SE_02_141400022 | chr10:8048345-8059381 |
Sample_02_1414 | Brain | IMR32 | 22 | 4 | 355 | 19 | 7 | 215 | 1339 | GATA3-AS1,GATA3 |
| SE_01_011200097 | chr10:8048475-8057932 |
Sample_01_0112 | Embryonic kidney | HEK293_encode | 97 | 3 | 284 | 17 | 7 | 157 | 1070 | GATA3-AS1,GATA3 |
| SE_02_111400290 | chr10:8049286-8057073 |
Sample_02_1114 | Embryonic kidney | HEK293 | 290 | 2 | 244 | 16 | 7 | 140 | 1070 | GATA3-AS1,GATA3 |
Genomic distribution of SEs associated with GATA3-AS1