Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000114646 |
| Gene: | CSPG5 | Gene type: | protein_coding |
| Strand: | - | External links: |
|
| Genomic region: | chr3:47562238-47580792 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_118400132 | chr3:47516388-47580028 |
Sample_02_1184 | Brain | GBM13 | 132 | 12 | 1454 | 128 | 1 | 171 | 1252 | CSPG5,ELP6,SCAP |
| SE_02_085700057 | chr3:47522387-47642846 |
Sample_02_0857 | Glioblastoma | Glioblastoma neurosphere cell_HF-3035 | 57 | 26 | 2687 | 195 | 1 | 256 | 2021 | CSPG5,SMARCC1,ELP6,SCAP |
| SE_02_093400205 | chr3:47553071-47574747 |
Sample_02_0934 | Embryo | H7-WT | 205 | 3 | 488 | 31 | 0 | 87 | 572 | CSPG5,ELP6 |
| SE_02_028400083 | chr3:47565952-47679410 |
Sample_02_0284 | Pelvis | patient 119 | 83 | 19 | 2417 | 147 | 0 | 235 | 1892 | CSPG5,SMARCC1 |
| SE_02_093200417 | chr3:47569924-47574800 |
Sample_02_0932 | Embryo | H9 WT_1 | 417 | 1 | 106 | 5 | 0 | 52 | 92 | CSPG5 |
| SE_02_117900458 | chr3:47570459-47580085 |
Sample_02_1179 | Brain | GBM08 | 458 | 1 | 204 | 15 | 0 | 102 | 778 | CSPG5 |
| SE_00_001001276 | chr3:47570825-47584413 |
Sample_00_0010 | Embryo | endodermal-cell | 1276 | 2 | 290 | 18 | 0 | 102 | 826 | CSPG5,C3ORF75 |
| SE_02_119700906 | chr3:47571180-47579907 |
Sample_02_1197 | Brain | GBM33 | 906 | 3 | 192 | 14 | 0 | 102 | 758 | CSPG5 |
| SE_02_097100821 | chr3:47590486-47636574 |
Sample_02_0971 | Brain | H3.3K27M_XPS124018_xenograft | 821 | 12 | 1007 | 74 | 0 | 69 | 298 | SMARCC1,CSPG5 |
| SE_02_095800449 | chr3:47592353-47637068 |
Sample_02_0958 | Brain | H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft | 449 | 14 | 979 | 70 | 0 | 60 | 203 | SMARCC1,CSPG5 |
| SE_02_098200576 | chr3:47597827-47636406 |
Sample_02_0982 | Brain | H3.3K27M-KO_BT245-C2P3 | 576 | 9 | 845 | 63 | 0 | 59 | 203 | SMARCC1,CSPG5 |
| SE_02_096200356 | chr3:47597971-47645602 |
Sample_02_0962 | Brain | H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells | 356 | 20 | 1038 | 71 | 0 | 61 | 238 | SMARCC1,CSPG5 |
| SE_02_119300927 | chr3:47598005-47637287 |
Sample_02_1193 | Brain | GBM27 | 927 | 16 | 861 | 63 | 0 | 60 | 203 | SMARCC1,CSPG5 |
| SE_02_120200678 | chr3:47598329-47638058 |
Sample_02_1202 | Brain | GBM38 | 678 | 18 | 865 | 63 | 0 | 60 | 203 | SMARCC1,CSPG5 |
| SE_02_096900319 | chr3:47598388-47637807 |
Sample_02_0969 | Brain | H3.3K27M_PL637 | 319 | 16 | 860 | 63 | 0 | 60 | 203 | SMARCC1,CSPG5 |
| SE_02_117900315 | chr3:47598940-47637272 |
Sample_02_1179 | Brain | GBM08 | 315 | 10 | 837 | 63 | 0 | 60 | 203 | SMARCC1,CSPG5 |
| SE_02_097300454 | chr3:47599003-47636606 |
Sample_02_0973 | Brain | H3.3K27M-KO_BT245-c4p6-Rx_R2_cells | 454 | 11 | 819 | 63 | 0 | 60 | 203 | SMARCC1,CSPG5 |
| SE_02_080200238 | chr3:47599085-47636751 |
Sample_02_0802 | Brain | 3094 | 238 | 9 | 827 | 63 | 0 | 60 | 203 | SMARCC1,CSPG5 |
| SE_02_097700370 | chr3:47599217-47638214 |
Sample_02_0977 | Brain | 2089_H3.3K27WT | 370 | 18 | 851 | 63 | 0 | 60 | 203 | SMARCC1,CSPG5 |
| SE_02_118700821 | chr3:47599436-47638360 |
Sample_02_1187 | Brain | GBM16 | 821 | 15 | 848 | 62 | 0 | 60 | 203 | SMARCC1,CSPG5 |
| SE_02_085600511 | chr3:47600481-47638254 |
Sample_02_0856 | Glioblastoma | Glioblastoma neurosphere cell_HF-3016 | 511 | 6 | 829 | 61 | 0 | 60 | 203 | SMARCC1,CSPG5 |
| SE_02_128000061 | chr3:47610044-47681327 |
Sample_02_1280 | Bone | Mesenchymal stem cells_SPC_mutation_ EF1 | 61 | 20 | 1505 | 93 | 0 | 97 | 545 | SMARCC1,CSPG5 |
| SE_02_148100100 | chr3:47610080-47680387 |
Sample_02_1481 | Bone | MIC | 100 | 16 | 1477 | 92 | 0 | 91 | 495 | SMARCC1,CSPG5 |
| SE_02_151400632 | chr3:47611655-47649647 |
Sample_02_1514 | Lung | Differentiated AT1-like cells | 632 | 9 | 801 | 52 | 0 | 42 | 155 | SMARCC1,CSPG5 |
| SE_02_151300373 | chr3:47611807-47670176 |
Sample_02_1513 | Lung | Transitional AT2->1 cells | 373 | 10 | 1237 | 78 | 0 | 58 | 268 | SMARCC1,CSPG5 |
| SE_02_147900166 | chr3:47623209-47683486 |
Sample_02_1479 | Bone | EW-7 | 166 | 31 | 1288 | 66 | 0 | 82 | 446 | SMARCC1,CSPG5 |
| SE_02_147800222 | chr3:47630307-47667976 |
Sample_02_1478 | Bone | EW-3 | 222 | 12 | 811 | 44 | 0 | 49 | 234 | SMARCC1,CSPG5 |
| SE_02_148200575 | chr3:47634466-47667968 |
Sample_02_1482 | Bone | POE | 575 | 15 | 707 | 39 | 0 | 43 | 234 | SMARCC1,CSPG5 |
| SE_02_101701502 | chr3:47634759-47723966 |
Sample_02_1017 | Embryo | H9_Mesendoderm 24h_Hydroxyurea | 1502 | 23 | 1878 | 103 | 0 | 95 | 741 | SMARCC1,CSPG5 |
| SE_01_006400242 | chr3:47635799-47672006 |
Sample_01_0064 | Brain: derived from metastatic site: supra-orbital area | SK-N-MC | 242 | 10 | 757 | 40 | 0 | 24 | 231 | SMARCC1,CSPG5 |
| SE_02_070100142 | chr3:47636452-47667908 |
Sample_02_0701 | Bone | David_TC32 | 142 | 7 | 670 | 38 | 0 | 14 | 148 | SMARCC1,CSPG5 |
| SE_02_106100340 | chr3:47641221-47671871 |
Sample_02_1061 | Bone | TC71_WT | 340 | 16 | 630 | 35 | 0 | 18 | 162 | SMARCC1,CSPG5 |
| SE_02_148800343 | chr3:47641221-47671871 |
Sample_02_1488 | Bone | TC-71 | 343 | 16 | 630 | 35 | 0 | 18 | 162 | SMARCC1,CSPG5 |
| SE_02_147500368 | chr3:47641705-47671562 |
Sample_02_1475 | Bone | CHLA-25 | 368 | 9 | 615 | 35 | 0 | 18 | 162 | SMARCC1,CSPG5 |
| SE_02_148000488 | chr3:47642621-47670816 |
Sample_02_1480 | Bone | MHH-ES-1 | 488 | 13 | 583 | 35 | 0 | 18 | 154 | SMARCC1,CSPG5 |
| SE_02_148500955 | chr3:47642731-47668867 |
Sample_02_1485 | Bone | SK-ES-1 | 955 | 9 | 546 | 33 | 0 | 13 | 113 | SMARCC1,CSPG5 |
| SE_02_148600681 | chr3:47642868-47667190 |
Sample_02_1486 | Bone | SK-N-MC | 681 | 13 | 511 | 31 | 0 | 13 | 113 | SMARCC1,CSPG5 |
| SE_02_105900953 | chr3:47643410-47671058 |
Sample_02_1059 | Bone | A673_WT | 953 | 12 | 572 | 33 | 0 | 18 | 162 | SMARCC1,CSPG5 |
| SE_02_147300956 | chr3:47643410-47671058 |
Sample_02_1473 | Bone | A-673 | 956 | 12 | 572 | 33 | 0 | 18 | 162 | SMARCC1,CSPG5 |
| SE_01_001700222 | chr3:47643471-47665916 |
Sample_01_0017 | Muscle | A673 | 222 | 4 | 474 | 27 | 0 | 13 | 113 | SMARCC1,CSPG5 |
| SE_02_143301835 | chr3:47643910-47670984 |
Sample_02_1433 | Bone | A673 STAG2 null | 1835 | 8 | 560 | 33 | 0 | 18 | 162 | SMARCC1,CSPG5 |
| SE_02_106000136 | chr3:47645252-47670782 |
Sample_02_1060 | Bone | TC71_SA2 KO | 136 | 10 | 533 | 32 | 0 | 18 | 149 | SMARCC1,CSPG5 |
| SE_02_143201782 | chr3:47660101-47671032 |
Sample_02_1432 | Bone | A673 STAG2 WT | 1782 | 6 | 230 | 13 | 0 | 18 | 162 | SMARCC1,CSPG5 |
| SE_02_148700202 | chr3:47660180-47666791 |
Sample_02_1487 | Bone | TC-32 | 202 | 4 | 142 | 8 | 0 | 13 | 113 | SMARCC1,CSPG5 |
Genomic distribution of SEs associated with CSPG5