SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000267493
Gene: CIRBP-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr19:1267471-1270260 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_121200160 chr19:1264419-1277188 Sample_02_1212 Brain GBM30 160 1 438 20 0 108 1640 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_108300281 chr19:1264517-1277097 Sample_02_1083 Macula macula 281 1 431 20 0 107 1618 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_04_000200360 chr19:1265014-1277372 Sample_04_0002 Blood cold shocked K562 360 1 426 21 0 103 1683 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_108200139 chr19:1265156-1277060 Sample_02_1082 Retina retina 139 1 404 20 0 103 1609 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2,STK11,GPX4,APC2,C19orf24,TMEM259,C19orf26,ADAMTSL5
SE_04_000100771 chr19:1265336-1277110 Sample_04_0001 Blood heat shocked K562 771 1 400 20 0 103 1620 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_111600224 chr19:1265412-1277047 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 224 1 396 20 0 103 1608 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_076500218 chr19:1265779-1279432 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 218 1 489 24 0 95 1940 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_095300593 chr19:1268370-1277048 Sample_02_0953 Brain H3.3K27M_1840 593 1 316 15 0 61 1346 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_103400752 chr19:1268659-1276799 Sample_02_1034 Blood AML cell 752 1 298 14 0 61 1288 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_085500098 chr19:1268717-1276924 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 98 1 303 13 0 61 1288 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_058200280 chr19:1268751-1277005 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 280 1 303 13 0 61 1288 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_057700273 chr19:1268757-1276947 Sample_02_0577 Blood MOLM13_empty 273 1 302 13 0 61 1288 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_050100193 chr19:1269111-1275891 Sample_02_0501 Blood HL-60_CTRL 193 1 250 11 0 60 1157 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_046100748 chr19:1269226-1273988 Sample_02_0461 Blood MV-4-11-B cells 748 1 179 5 0 54 862 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_133500112 chr19:1269253-1275858 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 112 1 244 10 0 59 1123 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
SE_02_099400634 chr19:1269264-1275869 Sample_02_0994 Blood MOLM13_SIK3TQ 634 1 244 10 0 59 1117 CIRBP-AS1,CIRBP,C19ORF24,ATP5D,CBARP,MIDN,EFNA2
Genomic distribution of SEs associated with CIRBP-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of CIRBP-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)