SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000170956
Gene: CEACAM3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:41796587-41811554 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103601968 chr19:41766716-41803979 Sample_02_1036 Mammary gland HCC70_XY018 1968 17 1033 95 4 12 381 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_152400057 chr19:41767127-41803186 Sample_02_1524 Lung H3122 DMSO 57 11 995 87 4 12 381 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_151100235 chr19:41767255-41801758 Sample_02_1511 Lung H3122_untreated 235 17 937 69 3 12 381 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_01_010401027 chr19:41767318-41811757 Sample_01_0104 Lung upper lobe of left lung 1027 17 1270 145 5 29 1079 CEACAM3,CEACAM6,LYPD4,DMRTC2,RPS19,ARHGEF1
SE_02_068400076 chr19:41767330-41800031 Sample_02_0684 Lung DMS79 76 13 867 65 3 12 381 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_128700098 chr19:41767585-41800039 Sample_02_1287 Lung NCI-H510_p8-15 98 15 859 64 3 12 381 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_150900539 chr19:41767595-41794167 Sample_02_1509 Lung H3122_LR 539 9 700 57 2 12 163 CEACAM6,CEACAM3,LYPD4
SE_02_049300791 chr19:41767768-41789320 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 791 7 568 47 1 9 163 CEACAM6,CEACAM3
SE_02_153300374 chr19:41768085-41811021 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 374 10 1235 138 5 29 920 CEACAM3,CEACAM6,LYPD4,DMRTC2,RPS19,ARHGEF1
SE_02_103501718 chr19:41768606-41804062 Sample_02_1035 Mammary gland HCC70_Vehicle 1718 19 984 97 4 12 381 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_088400594 chr19:41770788-41781452 Sample_02_0884 Colon LoVo 594 1 269 23 1 6 154 CEACAM6,CEACAM3
SE_02_023600487 chr19:41771248-41785566 Sample_02_0236 Colon V206 487 7 358 25 0 9 104 CEACAM6,CEACAM3
SE_02_020800107 chr19:41771419-41785845 Sample_02_0208 Stomach YCC3 107 3 365 27 0 9 85 CEACAM6,CEACAM3
SE_02_020200078 chr19:41771441-41786009 Sample_02_0202 Stomach YCC7 78 4 368 28 0 9 84 CEACAM6,CEACAM3
SE_02_152300563 chr19:41771556-41799490 Sample_02_1523 Lung A549 DMSO 563 8 737 50 1 12 297 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_002100211 chr19:41771656-41803327 Sample_02_0021 Colon V429 211 5 876 73 3 12 287 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_040400130 chr19:41771935-41803051 Sample_02_0404 Mammary gland ZR-75-1_2 130 4 856 71 3 12 265 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_151200372 chr19:41771989-41811144 Sample_02_1512 Lung Purified AT2 cells 372 11 1124 125 4 29 835 CEACAM3,CEACAM6,LYPD4,DMRTC2,RPS19,ARHGEF1
SE_02_080900240 chr19:41772078-41799931 Sample_02_0809 Mammary gland T47D Serum 240 4 731 50 1 12 256 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_129700561 chr19:41772100-41810961 Sample_02_1297 Lung lung 561 18 1116 125 4 29 780 CEACAM3,CEACAM6,LYPD4,DMRTC2,RPS19
SE_02_105400321 chr19:41772179-41802543 Sample_02_1054 Esophagus SKGT4 321 11 831 67 3 12 245 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_016600512 chr19:41772342-41802939 Sample_02_0166 Mammary gland HCC1954_Parental 512 6 840 69 3 12 225 CEACAM3,LYPD4,CEACAM6,DMRTC2
SE_02_141100009 chr19:41773004-41803283 Sample_02_1411 Colon KM12C 9 22 847 73 3 11 218 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_071100990 chr19:41773013-41789259 Sample_02_0711 Pancreas hN35_organoid 990 9 433 34 0 8 0 CEACAM3,CEACAM6
SE_02_049600288 chr19:41773115-41792593 Sample_02_0496 Mammary gland C49R 288 10 515 43 1 8 0 CEACAM3,CEACAM6
SE_02_070700504 chr19:41773351-41785696 Sample_02_0707 Pancreas BxPC3 WT 504 10 313 22 0 8 0 CEACAM3,CEACAM6
SE_02_019200038 chr19:41773373-41789811 Sample_02_0192 Stomach MKN45 38 6 427 30 0 8 0 CEACAM6,CEACAM3
SE_02_128200054 chr19:41773680-41792726 Sample_02_1282 Lung NCI-H1092_p8-15 54 9 503 39 1 9 0 CEACAM3,CEACAM6
SE_02_071000766 chr19:41773830-41785578 Sample_02_0710 Pancreas hN34_organoid 766 7 302 21 0 7 0 CEACAM3,CEACAM6
SE_02_129200466 chr19:41773882-41802915 Sample_02_1292 Lung JHU-LX110-SCLC PDX 466 10 807 65 3 10 218 CEACAM3,CEACAM6,LYPD4,DMRTC2
SE_02_153000140 chr19:41781848-41821191 Sample_02_1530 Peripheral blood neutrophils_0BA0X 140 10 1138 152 8 23 916 CEACAM3,LYPD4,MIR6797,CEACAM6,DMRTC2,RPS19,BCKDHA,ARHGEF1
SE_02_152900151 chr19:41783198-41820591 Sample_02_1529 Peripheral blood neutrophils_0BC75 151 9 1085 149 8 23 916 CEACAM3,LYPD4,MIR6797,CEACAM6,DMRTC2,RPS19,BCKDHA,ARHGEF1
SE_02_010400155 chr19:41783399-41813275 Sample_02_0104 Blood neutrophils 155 6 879 119 6 23 916 CEACAM3,LYPD4,CEACAM6,DMRTC2,RPS19
SE_02_092800119 chr19:41783488-41819695 Sample_02_0928 Peripheral blood neutrophils_Ecoli 119 7 1041 144 8 23 916 CEACAM3,LYPD4,MIR6797,CEACAM6,DMRTC2,RPS19,BCKDHA,ARHGEF1
SE_02_153100128 chr19:41783704-41819697 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 128 6 1038 144 8 23 916 CEACAM3,LYPD4,MIR6797,CEACAM6,DMRTC2,RPS19,BCKDHA,ARHGEF1
SE_01_005200034 chr19:41784045-41821810 Sample_01_0052 Blood neutrophil 34 4 1091 149 8 23 916 CEACAM3,LYPD4,CEACAM6,DMRTC2,RPS19
SE_02_092700030 chr19:41784370-41821156 Sample_02_0927 Peripheral blood neutrophils_US 30 6 1069 148 8 23 916 CEACAM3,LYPD4,MIR6797,CEACAM6,DMRTC2,RPS19,BCKDHA,ARHGEF1
SE_02_117500706 chr19:41798212-41812282 Sample_02_1175 Brain GBM03 706 10 466 89 4 17 698 CEACAM3,LYPD4,CEACAM6,DMRTC2,RPS19
SE_00_005500767 chr19:41798563-41812416 Sample_00_0055 Spleen spleen 34y 767 8 459 88 4 17 698 CEACAM3,LYPD4,CEACAM6,DMRTC2,RPS19,CEACAM21,CD79A,ARHGEF1
SE_02_014700059 chr19:41801096-41812163 Sample_02_0147 Blood CD4_T_cells 59 6 368 80 2 17 698 CEACAM3,LYPD4,CEACAM6,DMRTC2,RPS19
Genomic distribution of SEs associated with CEACAM3
Genome Browser

The strength of the tissue affected by the gene

Expression of CEACAM3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)