SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000182985
Gene: CADM1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr11:115169218-115504957 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_029700303 chr11:115107655-115170609 Sample_02_0297 Neuroblastoma CLB-CAR 303 8 1898 106 14 461 80 CADM1
SE_02_004000989 chr11:115111852-115131210 Sample_02_0040 Embryo PFG 989 4 559 22 4 135 0 CADM1
SE_02_066300233 chr11:115139656-115223904 Sample_02_0663 Thyroid TT 233 20 2389 169 21 946 696 CADM1
SE_00_000300883 chr11:115164638-115224055 Sample_00_0003 Adrenal gland adrenal-gland_97d 883 8 1607 117 15 813 696 CADM1
SE_02_003300050 chr11:115165659-115335504 Sample_02_0033 Pancreas pancreatic-islets-F 50 21 4505 193 25 2051 874 CADM1
SE_01_008700219 chr11:115165718-115250055 Sample_01_0087 Thyroid gland thyroid-gland 219 10 2295 147 17 1139 874 CADM1
SE_02_108300081 chr11:115167339-115336333 Sample_02_1083 Macula macula 81 65 4469 192 25 2042 874 CADM1
SE_02_150300438 chr11:115168777-115256376 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 438 35 2354 147 18 1115 874 CADM1
SE_02_122300029 chr11:115170464-115239821 Sample_02_1223 Bone marrow KMS28BM 29 10 1884 129 16 860 753 CADM1
SE_02_122700071 chr11:115170841-115239073 Sample_02_1227 Bone marrow U266 71 14 1851 126 16 858 753 CADM1,LINC00900
SE_02_139600041 chr11:115180932-115258045 Sample_02_1396 Colon COLO320HSR_DMSO 41 17 2056 114 14 915 421 CADM1
SE_02_121900041 chr11:115187153-115231204 Sample_02_1219 Bone marrow H929 41 9 1160 84 11 570 303 CADM1
SE_02_029700646 chr11:115189683-115222706 Sample_02_0297 Neuroblastoma CLB-CAR 646 3 856 64 9 408 243 CADM1
SE_02_014600205 chr11:115190348-115226351 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 205 4 929 73 10 455 243 CADM1
SE_02_138800810 chr11:115191310-115223731 Sample_02_1388 Peripheral blood JB6_ALK+ 810 6 835 64 10 375 204 CADM1,REXO2
SE_02_038200116 chr11:115191481-115315539 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 116 11 3265 137 19 1382 382 CADM1
SE_02_139100200 chr11:115191646-115239739 Sample_02_1391 Peripheral blood FE-PD_ALK- 200 7 1279 87 12 534 341 CADM1,NXPE2
SE_02_122100507 chr11:115192137-115225874 Sample_02_1221 Bone marrow KMS11 507 8 871 69 10 416 204 CADM1
SE_01_004200142 chr11:115192618-115226257 Sample_01_0042 Haematopoietic and lymphoid tissue KMS-11 142 3 872 69 10 398 204 CADM1
SE_02_004700110 chr11:115197508-115334401 Sample_02_0047 Pancreatic endoderm IIDP/donor790 110 32 3581 135 19 1529 382 CADM1
SE_02_074700325 chr11:115199175-115325884 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 325 49 3347 129 18 1408 354 CADM1
SE_02_110900197 chr11:115199741-115354529 Sample_02_1109 Brain SK-N-FI 197 62 4032 152 22 1729 354 CADM1
SE_02_108200239 chr11:115207149-115327889 Sample_02_1082 Retina retina 239 44 3182 118 14 1390 354 CADM1
SE_02_078200499 chr11:115214024-115231466 Sample_02_0782 Blood MEC1 499 5 469 40 4 233 199 CADM1
SE_02_075000373 chr11:115216232-115265230 Sample_02_0750 Lymphoma Rec-1_GSI 373 18 1337 65 5 543 229 CADM1
SE_02_059400459 chr11:115216598-115306259 Sample_02_0594 iPSC-derived neural progenitors 459 20 2393 91 10 1035 229 CADM1
SE_02_078300755 chr11:115217765-115231272 Sample_02_0783 Blood MEC2 755 4 372 28 3 184 109 CADM1
SE_02_041000007 chr11:115218578-115338430 Sample_02_0410 Brain BT16_NoDox 7 8 3150 95 13 1303 178 CADM1
SE_02_122400837 chr11:115219046-115230107 Sample_02_1224 Bone marrow normal plasma cell 837 3 304 25 3 145 59 CADM1
SE_02_040700007 chr11:115219673-115338390 Sample_02_0407 Brain BT16 7 10 3116 93 13 1295 178 CADM1
SE_02_122200177 chr11:115219701-115226085 Sample_02_1222 Bone marrow KMS12 177 2 179 18 2 91 0 CADM1
SE_01_004800057 chr11:115220418-115231133 Sample_01_0048 Peripheral blood MM.1S 57 2 290 22 2 137 59 CADM1
SE_02_140200049 chr11:115220837-115230616 Sample_02_1402 Blood MM.1S_GNE-781 49 4 263 19 2 135 59 CADM1
SE_02_029700017 chr11:115240965-115442313 Sample_02_0297 Neuroblastoma CLB-CAR 17 17 5078 127 17 1999 49 CADM1
SE_02_066300248 chr11:115241028-115303697 Sample_02_0663 Thyroid TT 248 22 1662 46 6 722 0 CADM1
SE_02_031400184 chr11:115241265-115362437 Sample_02_0314 Neuroblastoma SK-N-FI 184 15 3116 82 13 1291 0 CADM1
SE_02_004000901 chr11:115244005-115265743 Sample_02_0040 Embryo PFG 901 8 573 16 1 224 0 CADM1
SE_02_052500604 chr11:115244491-115269275 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 604 16 669 17 2 273 0 CADM1
SE_02_049300216 chr11:115245312-115273451 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 216 15 746 25 3 348 0 CADM1
SE_02_078201063 chr11:115253720-115265433 Sample_02_0782 Blood MEC1 1063 4 316 8 0 95 0 CADM1
SE_02_002400480 chr11:115254554-115269897 Sample_02_0024 Blood CD56+ Natural Killer cells donor A 480 5 425 13 2 162 0 CADM1
SE_02_069200022 chr11:115254940-115328344 Sample_02_0692 Lung NCI-H526_no infection 22 24 1920 39 7 841 0 CADM1
SE_02_014600397 chr11:115255433-115272565 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 397 4 458 17 2 218 0 CADM1
SE_01_004800237 chr11:115255733-115265635 Sample_01_0048 Peripheral blood MM.1S 237 3 266 8 0 89 0 CADM1
SE_01_004200248 chr11:115256027-115271455 Sample_01_0042 Haematopoietic and lymphoid tissue KMS-11 248 2 417 15 2 191 0 CADM1
SE_02_092201107 chr11:115256135-115291935 Sample_02_0922 Heart fetal heart_PCW10_12434 1107 9 958 30 5 405 0 CADM1
SE_02_092500885 chr11:115256151-115299277 Sample_02_0925 Heart fetal heart_PCW17_12570 885 11 1146 34 5 489 0 CADM1
SE_02_129200822 chr11:115257292-115268365 Sample_02_1292 Lung JHU-LX110-SCLC PDX 822 10 310 11 1 99 0 CADM1
SE_00_000301202 chr11:115262049-115297006 Sample_00_0003 Adrenal gland adrenal-gland_97d 1202 6 938 31 5 371 0 CADM1
SE_02_034100031 chr11:115263031-115417843 Sample_02_0341 Autonomic ganglia SH-SY5Y_untreat 31 18 3829 103 13 1439 49 CADM1
SE_02_154800161 chr11:115267428-115342674 Sample_02_1548 Gastrointestinal Stromal GIST-226 161 19 1916 43 8 806 0 CADM1
SE_01_011100603 chr11:115275376-115306460 Sample_01_0111 Brain SK-N-SH 603 8 819 16 2 334 0 CADM1
SE_01_008700757 chr11:115283227-115327731 Sample_01_0087 Thyroid gland thyroid-gland 757 5 1153 15 3 497 0 CADM1
SE_02_128900085 chr11:115303086-115328378 Sample_02_1289 Lung NCI-H526_p8-15 85 12 636 3 2 313 0 CADM1
SE_02_029900528 chr11:115344182-115362626 Sample_02_0299 Neuroblastoma CLB-MA 528 4 488 18 3 190 0 CADM1
SE_02_041000220 chr11:115355977-115412248 Sample_02_0410 Brain BT16_NoDox 220 6 1288 38 2 370 25 CADM1
SE_02_040700233 chr11:115356133-115413027 Sample_02_0407 Brain BT16 233 8 1308 39 2 370 25 CADM1
SE_02_154800497 chr11:115363732-115417545 Sample_02_1548 Gastrointestinal Stromal GIST-226 497 17 1236 35 1 352 49 CADM1
SE_02_021100988 chr11:115395892-115438668 Sample_02_0211 Lung MRC-5_NFD_1DPT 988 8 1083 25 4 426 49 CADM1
SE_02_013800265 chr11:115406011-115412212 Sample_02_0138 Brain RT172 265 1 130 3 0 64 0 CADM1
SE_02_077600438 chr11:115407972-115478516 Sample_02_0776 Pancreas EndoC-BH1 438 20 1771 23 7 736 24 CADM1
SE_02_152200864 chr11:115456489-115465883 Sample_02_1522 Skin A375 RTKi 864 4 227 3 0 127 0 CADM1
SE_02_032200361 chr11:115486175-115506373 Sample_02_0322 Colon Caco-2 361 5 487 0 0 301 155 CADM1
SE_02_108301028 chr11:115488719-115506467 Sample_02_1083 Macula macula 1028 3 433 0 0 282 155 CADM1
SE_02_044100629 chr11:115493403-115504446 Sample_02_0441 Bone M112 629 10 254 0 0 197 83 CADM1
SE_02_043900273 chr11:115493580-115504452 Sample_02_0439 Bone Hu09 273 4 251 0 0 197 85 CADM1
SE_02_029700614 chr11:115494640-115506748 Sample_02_0297 Neuroblastoma CLB-CAR 614 1 278 0 0 265 155 CADM1
SE_02_068600152 chr11:115498144-115504429 Sample_02_0686 Lung NCI-H128_no infection 152 5 145 0 0 158 82 CADM1
SE_02_119601316 chr11:115499359-115505184 Sample_02_1196 Brain GBM32 1316 2 130 0 0 174 155 CADM1
SE_02_097100732 chr11:115499438-115505616 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 732 2 133 0 0 184 155 CADM1
SE_02_098200336 chr11:115500282-115505079 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 336 1 104 0 0 154 155 CADM1
SE_02_098000284 chr11:115500628-115504384 Sample_02_0980 Brain BT245 284 3 82 0 0 115 73 CADM1
SE_02_096100512 chr11:115500717-115504434 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 512 3 80 0 0 120 82 CADM1
SE_02_095500500 chr11:115501038-115504409 Sample_02_0955 Brain IDH1_2469 500 2 74 0 0 114 76 CADM1
SE_02_110800169 chr11:115550493-115679616 Sample_02_1108 Brain SK-N-BE_2_-C 169 42 3690 225 20 0 0 CADM1
SE_02_029700079 chr11:115564042-115675469 Sample_02_0297 Neuroblastoma CLB-CAR 79 16 3172 205 15 0 0 CADM1
SE_02_123500394 chr11:115565990-115617173 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 394 18 1433 122 3 0 0 CADM1
SE_02_108200742 chr11:115597633-115646459 Sample_02_1082 Retina retina 742 15 1370 88 8 0 0 CADM1
SE_02_108300923 chr11:115597795-115660487 Sample_02_1083 Macula macula 923 18 1766 92 11 0 0 CADM1
SE_02_113600871 chr11:115606568-115626480 Sample_02_1136 Bone U2OS-anaphase/telophase 871 11 545 39 4 0 0 CADM1
SE_02_043900817 chr11:115606604-115623700 Sample_02_0439 Bone Hu09 817 5 464 31 2 0 0 CADM1
Genomic distribution of SEs associated with CADM1
Genome Browser

The strength of the tissue affected by the gene

Expression of CADM1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)