SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000273294
Gene: C1QTNF3-AMACR Gene type: protein_coding
Strand: - External links:
Genomic region: chr5:33987174-34124528 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_140800034 chr5:34154671-34260976 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 34 31 1778 160 1 0 456 C1QTNF3-AMACR
SE_02_066400313 chr5:34154737-34191756 Sample_02_0664 Prostate LNCaP_DMSO 313 8 625 46 1 0 171 C1QTNF3-AMACR
SE_02_076400618 chr5:34154943-34192503 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 618 13 628 46 1 0 298 C1QTNF3-AMACR
SE_02_103900045 chr5:34174100-34193557 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 45 8 254 11 1 0 456 C1QTNF3-AMACR,AMACR
SE_02_104700812 chr5:34174774-34193602 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 812 6 235 11 1 0 456 C1QTNF3-AMACR,AMACR
SE_02_088600310 chr5:34177788-34190114 Sample_02_0886 Skin foreskin_ p63KLF4 310 2 92 4 0 0 0 C1QTNF3-AMACR
SE_02_077600069 chr5:34178494-34250258 Sample_02_0776 Pancreas EndoC-BH1 69 15 1019 89 0 0 456 C1QTNF3-AMACR,SLC45A2,AMACR
SE_02_101600886 chr5:34178496-34202752 Sample_02_1016 Embryo H9_Mesendoderm_24h 886 4 217 11 0 0 456 C1QTNF3-AMACR,AMACR
SE_02_101701571 chr5:34178539-34203265 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1571 10 224 11 0 0 456 C1QTNF3-AMACR,C1QTNF3
SE_02_138400160 chr5:34178597-34193603 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 160 4 93 3 0 0 456 C1QTNF3-AMACR,AMACR
SE_02_101500689 chr5:34178609-34206952 Sample_02_1015 Embryo H9_ Undifferentiated 689 7 269 16 0 0 456 C1QTNF3-AMACR,AMACR
SE_02_077501515 chr5:34178632-34220599 Sample_02_0775 Pancreas EndoC-BH1_SE 1515 13 548 41 0 0 456 C1QTNF3-AMACR,SLC45A2,AMACR
SE_02_104600926 chr5:34178956-34193550 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 926 8 91 3 0 0 456 C1QTNF3-AMACR,AMACR
SE_02_116000377 chr5:34179051-34193588 Sample_02_1160 Embryo H1_shLuc 377 3 92 3 0 0 456 C1QTNF3-AMACR,C1QTNF3
SE_02_110500161 chr5:34179076-34194073 Sample_02_1105 Brain NBL-S 161 9 101 3 0 0 456 C1QTNF3-AMACR,AMACR
SE_02_100000228 chr5:34179694-34193253 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 228 3 89 2 0 0 413 C1QTNF3-AMACR,C1QTNF3
SE_02_155500405 chr5:34179811-34193148 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 405 3 89 2 0 0 388 C1QTNF3-AMACR,C1QTNF3
SE_02_116100166 chr5:34179948-34193540 Sample_02_1161 Embryo H1_shZNF587 166 3 88 2 0 0 456 C1QTNF3-AMACR,AMACR
SE_02_104801173 chr5:34180111-34193567 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1173 7 90 2 0 0 456 C1QTNF3-AMACR,AMACR
SE_02_096600767 chr5:34181103-34194094 Sample_02_0966 Brain H3.3K27M_JN29-BS3 767 3 92 2 0 0 456 C1QTNF3-AMACR,C1QTNF3
SE_02_121200544 chr5:34181130-34193575 Sample_02_1212 Brain GBM30 544 4 83 2 0 0 456 C1QTNF3-AMACR,C1QTNF3
SE_02_101300231 chr5:34181188-34193562 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 231 6 81 2 0 0 456 C1QTNF3-AMACR,AMACR
SE_02_110800138 chr5:34181692-34193656 Sample_02_1108 Brain SK-N-BE_2_-C 138 2 83 2 0 0 456 C1QTNF3-AMACR,AMACR
SE_02_133100234 chr5:34182652-34206985 Sample_02_1331 Blood Molm13_CTRL 234 8 252 15 0 0 456 C1QTNF3-AMACR,C1QTNF3
SE_02_134000573 chr5:34185729-34213700 Sample_02_1340 Blood acute myeloid leukemia 573 9 373 26 0 0 456 C1QTNF3-AMACR,C1QTNF3
SE_02_116500007 chr5:34187366-34193557 Sample_02_1165 Testis round spermatids 7 2 56 0 0 0 456 C1QTNF3-AMACR,C1QTNF3
SE_02_100700129 chr5:34188011-34193593 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 129 4 56 0 0 0 456 C1QTNF3-AMACR,C1QTNF3
SE_02_100300087 chr5:34188038-34193189 Sample_02_1003 Brain Lateral temporal lobe_19T_Young 87 4 54 0 0 0 404 C1QTNF3-AMACR,C1QTNF3
SE_02_100500246 chr5:34188269-34193150 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 246 5 50 0 0 0 390 C1QTNF3-AMACR,C1QTNF3
SE_02_110400234 chr5:34189344-34194140 Sample_02_1104 Brain NB-69 234 2 53 0 0 0 456 C1QTNF3-AMACR,AMACR
SE_02_074000336 chr5:34189803-34194628 Sample_02_0740 Muscle RH3 336 2 49 1 0 0 456 C1QTNF3-AMACR,C1QTNF3
SE_02_101000080 chr5:34189992-34192298 Sample_02_1010 Brain Lateral temporal lobe_3T_AD 80 2 24 0 0 0 250 C1QTNF3-AMACR,C1QTNF3
SE_02_100100024 chr5:34190448-34193542 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 24 5 33 0 0 0 398 C1QTNF3-AMACR,C1QTNF3
SE_02_096100333 chr5:34190468-34193555 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 333 1 34 0 0 0 394 C1QTNF3-AMACR,C1QTNF3
SE_02_150000609 chr5:34190892-34194079 Sample_02_1500 Brain KELLY_untreat 609 1 39 0 0 0 308 C1QTNF3-AMACR
SE_02_140600111 chr5:34205210-34261202 Sample_02_1406 Prostate LNCaP_EtOH_vehicle_4h 111 21 975 105 0 0 0 C1QTNF3-AMACR
SE_02_076400195 chr5:34205232-34249656 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 195 12 752 75 0 0 0 C1QTNF3-AMACR
SE_02_140700186 chr5:34205297-34260961 Sample_02_1407 Prostate LNCaP_R1881 4h 186 14 967 104 0 0 0 C1QTNF3-AMACR
SE_02_140900088 chr5:34205311-34261053 Sample_02_1409 Prostate LNCaP_R1881 4h_MED19_OE 88 13 969 104 0 0 0 C1QTNF3-AMACR
SE_02_147600083 chr5:34206342-34260961 Sample_02_1476 Bone EW-1 83 18 958 102 0 0 0 C1QTNF3-AMACR,C1QTNF3
SE_02_148100381 chr5:34206479-34260443 Sample_02_1481 Bone MIC 381 17 948 101 0 0 0 C1QTNF3-AMACR
SE_02_148500099 chr5:34210009-34261677 Sample_02_1485 Bone SK-ES-1 99 11 902 97 0 0 0 C1QTNF3-AMACR
SE_02_128000182 chr5:34210373-34259497 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 182 18 854 94 0 0 0 C1QTNF3-AMACR,AMACR
SE_02_066400199 chr5:34210932-34250305 Sample_02_0664 Prostate LNCaP_DMSO 199 11 658 66 0 0 0 C1QTNF3-AMACR
SE_02_147800063 chr5:34215278-34264143 Sample_02_1478 Bone EW-3 63 8 866 91 0 0 0 C1QTNF3-AMACR,C1QTNF3
SE_02_123700475 chr5:34220641-34265744 Sample_02_1237 Skin MKL2_virus_positive 475 18 774 87 0 0 0 C1QTNF3-AMACR,C1QTNF3
SE_02_123600082 chr5:34220660-34286405 Sample_02_1236 Skin MKL1_virus_positive 82 22 1251 142 1 0 0 C1QTNF3-AMACR,C1QTNF3
SE_02_068700837 chr5:34230908-34264454 Sample_02_0687 Lung NCI-H146_no infection 837 9 554 64 0 0 0 C1QTNF3-AMACR,C1QTNF3
SE_02_051100203 chr5:34233724-34249319 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 203 7 222 22 0 0 0 C1QTNF3-AMACR
SE_02_050900158 chr5:34233817-34249434 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 158 8 222 23 0 0 0 C1QTNF3-AMACR
SE_02_051000301 chr5:34234083-34246801 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 301 7 187 19 0 0 0 C1QTNF3-AMACR
SE_02_148200292 chr5:34234100-34258121 Sample_02_1482 Bone POE 292 11 377 47 0 0 0 C1QTNF3-AMACR,C1QTNF3
SE_02_148600070 chr5:34234189-34260832 Sample_02_1486 Bone SK-N-MC 70 9 435 51 0 0 0 C1QTNF3-AMACR
SE_02_147301070 chr5:34234604-34257421 Sample_02_1473 Bone A-673 1070 12 352 46 0 0 0 C1QTNF3-AMACR
SE_02_105901011 chr5:34234607-34257425 Sample_02_1059 Bone A673_WT 1011 14 352 46 0 0 0 C1QTNF3-AMACR
SE_02_106100502 chr5:34234655-34259725 Sample_02_1061 Bone TC71_WT 502 9 402 49 0 0 0 C1QTNF3-AMACR,AMACR
SE_02_148800502 chr5:34234655-34260284 Sample_02_1488 Bone TC-71 502 12 415 49 0 0 0 C1QTNF3-AMACR,AMACR
SE_02_148000746 chr5:34234866-34257313 Sample_02_1480 Bone MHH-ES-1 746 8 346 45 0 0 0 C1QTNF3-AMACR,AMACR
SE_02_106000407 chr5:34234927-34253715 Sample_02_1060 Bone TC71_SA2 KO 407 7 265 29 0 0 0 C1QTNF3-AMACR
SE_02_103601732 chr5:34236595-34245346 Sample_02_1036 Mammary gland HCC70_XY018 1732 2 122 12 0 0 0 C1QTNF3-AMACR,AMACR
SE_02_148300212 chr5:34237585-34258260 Sample_02_1483 Bone RD-ES 212 12 323 41 0 0 0 C1QTNF3-AMACR,AMACR
SE_02_070100479 chr5:34237743-34260004 Sample_02_0701 Bone David_TC32 479 8 357 43 0 0 0 C1QTNF3-AMACR,C1QTNF3
SE_02_069300235 chr5:34238812-34264672 Sample_02_0693 Lung NCI-H69_no infection 235 14 440 51 0 0 0 C1QTNF3-AMACR,AMACR
SE_02_070200324 chr5:34239077-34253080 Sample_02_0702 Bone David_TC71 324 6 186 20 0 0 0 C1QTNF3-AMACR,C1QTNF3
SE_02_147500525 chr5:34239278-34260646 Sample_02_1475 Bone CHLA-25 525 8 349 42 0 0 0 C1QTNF3-AMACR,AMACR
SE_02_148400144 chr5:34239359-34259779 Sample_02_1484 Bone Rh1 144 10 324 41 0 0 0 C1QTNF3-AMACR
SE_02_129100135 chr5:34239428-34250177 Sample_02_1291 Lung NCI-H889_p8-15 135 8 137 14 0 0 0 C1QTNF3-AMACR
SE_02_068900115 chr5:34239627-34264798 Sample_02_0689 Lung NCI-H446_no infection 115 17 428 51 0 0 0 C1QTNF3-AMACR
SE_02_129000202 chr5:34239947-34264727 Sample_02_1290 Lung NCI-H69_p8-15 202 14 424 51 0 0 0 C1QTNF3-AMACR,AMACR
SE_02_147700787 chr5:34240133-34259296 Sample_02_1477 Bone EW-22 787 10 310 39 0 0 0 C1QTNF3-AMACR,C1QTNF3
SE_02_068600395 chr5:34240179-34246744 Sample_02_0686 Lung NCI-H128_no infection 395 3 89 9 0 0 0 C1QTNF3-AMACR,AMACR
SE_02_129200682 chr5:34240703-34246074 Sample_02_1292 Lung JHU-LX110-SCLC PDX 682 4 74 8 0 0 0 C1QTNF3-AMACR,C1QTNF3
SE_02_123900689 chr5:34240709-34265852 Sample_02_1239 Skin Waga_virus_positive 689 14 436 52 0 0 0 C1QTNF3-AMACR
SE_02_069100093 chr5:34240995-34265173 Sample_02_0691 Lung NCI-H524_no infection 93 15 424 50 0 0 0 C1QTNF3-AMACR
SE_02_103501960 chr5:34241711-34246446 Sample_02_1035 Mammary gland HCC70_Vehicle 1960 4 71 3 0 0 0 C1QTNF3-AMACR,AMACR
Genomic distribution of SEs associated with C1QTNF3-AMACR
Genome Browser

The strength of the tissue affected by the gene

Expression of C1QTNF3-AMACR

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)