SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000124701
Gene: APOBEC2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr6:41053304-41064511 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_003300249 chr6:41035080-41067908 Sample_02_0033 Pancreas pancreatic-islets-F 249 1 825 98 10 113 1101 TSPO2,APOBEC2,C6ORF130,UNC5CL,NFYA,LOC221442
SE_02_038200147 chr6:41044717-41076452 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 147 1 801 93 8 186 1242 APOBEC2,NFYA,C6ORF130,LOC221442,TSPO2,UNC5CL
SE_02_038100203 chr6:41045027-41070077 Sample_02_0381 Heart purified cardiomyocyte WT 203 1 616 75 7 123 690 APOBEC2,C6ORF130,NFYA,LOC221442,TSPO2,UNC5CL
SE_02_032200537 chr6:41045072-41059912 Sample_02_0322 Colon Caco-2 537 1 367 55 5 71 190 APOBEC2,NFYA,LOC221442,TSPO2,UNC5CL,C6ORF130
SE_02_036800382 chr6:41046548-41064874 Sample_02_0368 Skeletal muscle NS134 382 4 448 58 5 106 418 APOBEC2,NFYA,LOC221442,TSPO2,UNC5CL,C6ORF130
SE_01_002300436 chr6:41047157-41059424 Sample_01_0023 Embryo cardiac-muscle-cell 436 1 302 42 4 71 190 APOBEC2,NFYA,LOC221442,TSPO2,UNC5CL,C6ORF130
SE_02_074700677 chr6:41047383-41059949 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 677 1 311 43 3 71 190 APOBEC2,LOC101929555,TSPO2,OARD1,NFYA,ADCY10P1,UNC5CL
SE_01_007600680 chr6:41047519-41067949 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 680 1 499 56 5 113 540 APOBEC2,C6ORF130,NFYA,LOC221442,TSPO2,UNC5CL
SE_00_003200321 chr6:41047535-41065934 Sample_00_0032 Psoas muscle psoas-muscle_30y 321 6 444 54 4 109 440 APOBEC2,NFYA,LOC221442,TSPO2,UNC5CL,C6ORF130
SE_02_037200516 chr6:41048425-41064486 Sample_02_0372 Skeletal muscle RMS008 516 4 399 51 3 97 380 APOBEC2,NFYA,LOC221442,TSPO2,UNC5CL,C6ORF130
SE_02_155900506 chr6:41048845-41066477 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 506 10 422 51 4 95 440 APOBEC2,LOC101929555,TSPO2,OARD1,NFYA,ADCY10P1,UNC5CL
SE_01_009400620 chr6:41051346-41067870 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 620 1 395 42 4 85 540 OARD1,APOBEC2,LOC101929555,TSPO2,NFYA,ADCY10P1,UNC5CL
SE_00_002501024 chr6:41051386-41065148 Sample_00_0025 Muscle of leg muscle-of-leg 1024 1 328 39 3 79 440 APOBEC2,NFYA,LOC221442,TSPO2,UNC5CL,C6ORF130
SE_02_092101013 chr6:41051395-41059938 Sample_02_0921 Heart embryonic heart_CS22 1013 1 203 28 2 43 190 APOBEC2,LOC101929555,TSPO2,OARD1,NFYA,ADCY10P1,UNC5CL
SE_02_074600827 chr6:41051429-41057724 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 827 1 160 20 2 31 190 APOBEC2,LOC101929555,TSPO2,OARD1,NFYA,ADCY10P1,UNC5CL
SE_02_156001328 chr6:41052479-41058127 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1328 1 139 19 2 31 149 APOBEC2,LOC101929555,TSPO2,OARD1,NFYA,ADCY10P1,UNC5CL
SE_02_077501680 chr6:41053300-41058789 Sample_02_0775 Pancreas EndoC-BH1_SE 1680 1 123 16 1 14 75 APOBEC2,LOC101929555,TSPO2,OARD1,NFYA,ADCY10P1,UNC5CL
SE_02_035400963 chr6:41056674-41068965 Sample_02_0354 Colon Colo205 963 1 288 29 2 65 381 APOBEC2,C6ORF130,NFYA,LOC221442,TSPO2,UNC5CL
Genomic distribution of SEs associated with APOBEC2
Genome Browser

The strength of the tissue affected by the gene

Expression of APOBEC2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)