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Searching by Super-enhancer
Biosample Type :
{{s}}
Tissue Type :
{{s}}
Data Source :
{{s}}
Sample Name :
{{s}}
Chromosome :
All Chr
Chr1
Chr2
Chr3
Chr4
Chr5
Chr6
Chr7
Chr8
Chr9
Chr10
Chr11
Chr12
Chr13
Chr14
Chr15
Chr16
Chr17
Chr18
Chr19
Chr20
Chr21
Chr22
ChrX
ChrY
ChrMT
Start position :
End position :
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Option explanation:
1) Biosample type:
Cell type classification.
2) Tissue type:
Sample tissue type.
3) Data sources:
Sources of data, including ENCODE, Roadmap, NCBI GEO/SRA and GGR.
4) Biosample name:
Biosample name consists of cell/tissue/cell line name, treatment condition, processing condition, etc.
5) Chromosome:
Chromosome.
6) Start position:
Genomic position of the start of super-enhancer.
7) End position:
Genomic position of the end of super-enhancer.
Searching by Sample
Biosample Type :
{{s}}
Tissue Type :
{{s}}
Data Source :
{{s}}
Sample Name :
{{s}}
Chromosome :
All Chr
Chr1
Chr2
Chr3
Chr4
Chr5
Chr6
Chr7
Chr8
Chr9
Chr10
Chr11
Chr12
Chr13
Chr14
Chr15
Chr16
Chr17
Chr18
Chr19
Chr20
Chr21
Chr22
ChrX
ChrY
ChrMT
Start position :
End position :
Search
Searching by TF
Biosample Type :
{{s}}
Tissue Type :
{{s}}
Data Source :
{{s}}
Sample Name :
{{s}}
TF class :
{{s}}
TF name :
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TF name:
AFF1;CTCF;BCL6;DMRT1
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Searching by Pathway
Data source :
{{s}}
Pathway Name :
{{s}}
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Option explanation:
Users can determine a pathway by selecting pathway source and pathway name and obtain terminal TFs of these pathways.
1) Data source:
The databases of pathways, including KEGG, Reactome, NetPath, WikiPathways, PANTHER, PID, HumanCyc, CTD, SMPDB and INOH.
2) Pathway:
Pathway name
Searching by Gene
Gene Symbol:
Search
Option explanation:
Users submit a gene symbol and identify its associated super-enhancers by four annotation strategies.
Gene Symbol:
Only gene symbol can be supported.