SEanalysis

Searching by Super-enhancer

Biosample Type :

Tissue Type :

Data Source :

Sample Name :

Chromosome :

Start position :

End position :

Option explanation:
1) Biosample type: Cell type classification.
2) Tissue type: Sample tissue type.
3) Data sources: Sources of data, including ENCODE, Roadmap, NCBI GEO/SRA and GGR.
4) Biosample name: Biosample name consists of cell/tissue/cell line name, treatment condition, processing condition, etc.
5) Chromosome: Chromosome.
6) Start position: Genomic position of the start of super-enhancer.
7) End position: Genomic position of the end of super-enhancer.

Searching by Sample

Biosample Type :

Tissue Type :

Data Source :

Sample Name :

Chromosome :

Start position :

End position :

Searching by TF

Biosample Type :

Tissue Type :

Data Source :

Sample Name :

TF class :

TF name :

Searching by Pathway

Option explanation:
Users can determine a pathway by selecting pathway source and pathway name and obtain terminal TFs of these pathways.
1) Data source: The databases of pathways, including KEGG, Reactome, NetPath, WikiPathways, PANTHER, PID, HumanCyc, CTD, SMPDB and INOH.
2) Pathway: Pathway name

Searching by Gene

Option explanation:
Users submit a gene symbol and identify its associated super-enhancers by four annotation strategies.
Gene Symbol: Only gene symbol can be supported.