General Details

Sample Id:Sample_02_434
Genome:Homo sapiens-hg19
Series: GSE81696
Biosample Type:Cell line
Tissue Type:Kidney
Sample Name:HEK293
PMID: 27926874|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_43400001 chr6 58776109 58780172 30 4 0 393 1 NA
SE_02_43400002 chr10 42354960 42395102 41 8 0 680 23 NA
SE_02_43400003 chr16 46385798 46433126 47 2 0 567 38 NA
SE_02_43400004 chr18 18510963 18520453 28 2 0 308 5 NA
SE_02_43400005 chr2 92296706 92321674 27 1 0 304 4 NA
SE_02_43400006 chr2 89853097 89880060 39 1 0 535 10 NA
SE_02_43400007 chr4 49093499 49123238 38 0 0 531 9 NA
SE_02_43400008 chrX 30806585 30824910 1 16 0 234 4 -0.0629337
SE_02_43400009 chr4 49141605 49157553 31 0 0 493 9 NA
SE_02_43400010 chr1 121351896 121360120 24 2 0 326 8 NA
SE_02_43400011 chr4 49639055 49659838 41 0 0 535 5 NA
SE_02_43400012 chrX 134368105 134387515 1 16 0 74 5 -0.00741862
SE_02_43400013 chr11 51568912 51579702 28 0 0 318 3 NA

Master TFs Network

CRC model in Sample_02_434