General Details

Sample Id:Sample_02_365
Genome:Homo sapiens-hg19
Series: GSE83726
Biosample Type:Tissue
Tissue Type:Skeletal muscle
Sample Name:NCI0075
PMID: 28446439|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_36500001 chr12 6852141 6899504 1 230 3 1702 1 0.0744939
SE_02_36500002 chr12 7028217 7081636 1 191 5 1472 1 0.0857329
SE_02_36500003 chr12 6923003 6953986 1 180 1 901 1 0.100155
SE_02_36500004 chr9 132217364 132287549 1 204 2 1269 6 0.00290702
SE_02_36500005 chr2 43250801 43364912 1 247 3 1725 17 0.041468
SE_02_36500006 chr2 23699424 23762172 1 252 3 1466 3 0.0555286
SE_02_36500007 chr12 6954200 6971933 1 86 0 441 1 0.116937
SE_02_36500008 chr4 49106943 49150037 1 5 0 28 6 NA
SE_02_36500009 chr19 2446030 2555775 1 172 1 1497 15 -0.0381938
SE_02_36500010 chr17 55934535 56034304 1 189 3 1696 14 0.0761613
SE_02_36500011 chr12 6971967 6984317 0 57 1 434 1 0.119894
SE_02_36500012 chr12 125382480 125426457 1 149 2 1323 8 0.00167019
SE_02_36500013 chr17 75367267 75449167 1 152 2 1149 12 -0.0155915
SE_02_36500014 chr12 124972451 125055275 1 182 5 1277 15 0.00266807
SE_02_36500015 chr7 75919319 75949384 1 112 1 941 4 -0.00528911
SE_02_36500016 chr11 1968518 2013521 1 117 1 1040 7 -0.0298644
SE_02_36500017 chr2 42251546 42326996 1 192 2 1583 11 0.079196
SE_02_36500018 chr11 65237893 65278734 1 140 2 827 6 0.0309505
SE_02_36500019 chr2 24148180 24168102 1 78 3 288 2 0.0303619
SE_02_36500020 chr9 132310427 132374290 1 159 1 782 10 0.00213057
SE_02_36500021 chr8 145011927 145052736 1 116 2 607 6 0.0109699
SE_02_36500022 chr10 74003081 74037832 1 131 2 1057 6 0.0817186
SE_02_36500023 chr9 127003908 127069205 1 107 0 845 9 0.0200699
SE_02_36500024 chr2 43436895 43483209 1 163 2 1095 6 0.0837466
SE_02_36500025 chr16 85308123 85401009 1 160 5 1285 17 -0.0323734
SE_02_36500026 chr19 5954042 5995995 1 130 1 957 5 -0.0166403
SE_02_36500027 chr8 72738982 72762724 1 97 0 620 4 0.0401738
SE_02_36500028 chr11 125931163 126018581 1 167 4 1078 12 0.0321485
SE_02_36500029 chr12 12856743 12888779 1 176 3 797 6 0.100639
SE_02_36500030 chr1 156049260 156100854 1 167 2 1214 10 0.0904968
SE_02_36500031 chr2 27291386 27311452 1 71 1 699 1 0.130833
SE_02_36500032 chr16 85574047 85650515 1 218 4 1032 15 0.0240788
SE_02_36500033 chr2 20249356 20299487 1 130 2 939 6 0.0303137
SE_02_36500034 chr19 11189978 11256543 1 142 2 779 8 -0.0520587
SE_02_36500035 chr2 19545374 19564374 1 73 1 502 2 0.0870773
SE_02_36500036 chr8 37636912 37663073 1 126 1 859 4 0.0358944
SE_02_36500037 chr2 28556111 28619863 1 99 2 812 8 0.0538025
SE_02_36500038 chr11 62305330 62344444 1 111 3 780 5 0.0724974
SE_02_36500039 chr19 46893772 46930415 1 116 2 614 5 -0.0161925
SE_02_36500040 chr12 6832425 6846138 1 93 1 500 1 0.0588439
SE_02_36500041 chr1 149799507 149815696 0 89 2 806 1 0.0518239
SE_02_36500042 chr1 149821450 149837438 0 88 2 806 1 0.0516835
SE_02_36500043 chr2 16050009 16086753 1 118 1 1022 3 0.0515715
SE_02_36500044 chr17 47072291 47110781 1 146 3 1097 5 0.0879793
SE_02_36500045 chr2 20812412 20852995 1 151 0 1180 7 -0.000625187
SE_02_36500046 chr17 43223212 43251937 1 103 1 694 4 0.0798659
SE_02_36500047 chr2 24297113 24308992 1 85 0 484 2 0.0563329
SE_02_36500048 chr4 111536572 111556683 1 94 3 481 3 0.192917
SE_02_36500049 chr11 63915215 63957230 1 86 1 464 4 0.0110084
SE_02_36500050 chr16 70717468 70770918 1 110 1 815 10 0.0234583
SE_02_36500051 chr8 145471632 145518068 1 89 2 853 9 -0.0237553
SE_02_36500052 chr2 23601842 23659473 1 193 3 1268 7 0.0709993
SE_02_36500053 chr17 79358676 79404678 1 125 2 967 5 0.00290975
SE_02_36500054 chr12 6796111 6809840 0 73 1 493 1 0.115164
SE_02_36500055 chr21 44819421 44890042 0 142 2 1165 12 -0.0625744
SE_02_36500056 chr19 18388582 18417366 1 93 1 681 4 0.0058842
SE_02_36500057 chr19 45928076 45989966 1 128 1 641 11 0.0332884
SE_02_36500058 chr8 103778869 103828288 1 123 3 1273 6 0.0298113
SE_02_36500059 chr12 2901249 2924125 1 93 1 904 4 0.0454524
SE_02_36500060 chr8 144342622 144374575 1 101 1 825 4 -0.0607793
SE_02_36500061 chr8 142396302 142442670 1 90 1 853 8 -0.0247022
SE_02_36500062 chr3 134073120 134095909 1 115 1 707 2 0.0915447
SE_02_36500063 chr12 3241422 3275200 1 137 1 678 5 0.0182341
SE_02_36500064 chr8 37548381 37596409 1 127 2 695 7 0.0597379
SE_02_36500065 chr2 20729172 20796081 1 136 1 909 10 0.0190141
SE_02_36500066 chr17 17654140 17695619 1 151 1 1258 6 0.0471618
SE_02_36500067 chr14 61091955 61126230 1 123 2 760 6 0.175699
SE_02_36500068 chr8 97505367 97545926 1 110 2 843 6 0.0819677
SE_02_36500069 chr1 41939927 41988824 1 93 1 521 9 0.07493
SE_02_36500070 chr17 77749374 77788611 1 121 0 696 9 0.0614374
SE_02_36500071 chr10 101279370 101315993 1 79 0 634 6 0.0747721
SE_02_36500072 chr10 131731343 131769663 1 172 2 891 6 0.146263
SE_02_36500073 chr2 23805582 23861003 1 158 3 1065 6 0.0593288
SE_02_36500074 chr6 56910879 56913476 0 19 0 258 1 0.0428837
SE_02_36500075 chr3 147108837 147138113 1 131 2 415 4 0.167163
SE_02_36500076 chr11 118777402 118801805 1 88 1 494 3 0.181242
SE_02_36500077 chr16 4337995 4390695 1 113 2 628 11 0.0207232
SE_02_36500078 chr6 56953534 56956835 1 43 1 367 1 0.0378105
SE_02_36500079 chr6 57036054 57048465 1 64 0 298 3 0.0771034
SE_02_36500080 chr19 19567746 19602264 1 103 1 875 4 0.0070261
SE_02_36500081 chr6 30683445 30694036 1 109 0 714 1 0.107958
SE_02_36500082 chr2 20098023 20103835 1 56 1 575 2 -0.0035034
SE_02_36500083 chr20 3775734 3802748 1 107 1 388 5 0.0572224
SE_02_36500084 chr11 75264578 75277512 1 61 0 264 2 0.0840806
SE_02_36500085 chr11 2160823 2173918 1 57 2 551 1 -0.0174334
SE_02_36500086 chr3 50294995 50311199 1 80 1 956 2 0.122216
SE_02_36500087 chr16 73065825 73106155 1 140 2 873 7 0.161582
SE_02_36500088 chr9 132144432 132200887 1 85 1 488 7 -0.00646697
SE_02_36500089 chr7 47609935 47646218 1 128 2 1466 4 -0.00537806
SE_02_36500090 chr8 23177615 23224698 1 116 1 826 5 0.0115494
SE_02_36500091 chr19 40926151 40952468 1 89 1 585 3 0.0515855
SE_02_36500092 chr6 30646356 30660913 1 73 1 562 1 0.155583
SE_02_36500093 chr5 140873267 140908981 1 102 2 451 7 0.118445
SE_02_36500094 chr12 7005722 7018374 0 111 1 584 1 0.0385298
SE_02_36500095 chr16 85469314 85521453 1 82 2 487 7 -0.0154557
SE_02_36500096 chr9 132081517 132125314 1 98 1 635 4 -0.00582601
SE_02_36500097 chr14 77379343 77429362 1 136 1 1064 11 0.0416462
SE_02_36500098 chr10 74056944 74097662 1 90 2 846 6 0.0405195
SE_02_36500099 chr2 232570173 232583206 1 64 2 329 3 0.0535197
SE_02_36500100 chr1 161492220 161511032 1 82 0 435 4 0.00144286
SE_02_36500101 chr7 5457206 5471216 1 75 2 426 2 0.112129
SE_02_36500102 chr12 6995822 7003858 1 62 1 443 1 NA
SE_02_36500103 chr2 25500319 25538861 1 131 1 752 6 0.0482208
SE_02_36500104 chr19 46970367 46992438 1 156 3 761 4 0.0106888
SE_02_36500105 chr8 22418316 22456592 1 84 1 396 4 0.0247317
SE_02_36500106 chr19 49131805 49143023 1 88 2 701 1 0.151676
SE_02_36500107 chr10 102637691 102670525 1 169 1 651 5 0.101441
SE_02_36500108 chr16 11677659 11735639 1 118 2 1042 10 -0.0111539
SE_02_36500109 chr13 114865444 114910234 1 90 2 586 9 -0.0953877
SE_02_36500110 chr7 129995301 130039147 1 120 0 923 6 0.0498645
SE_02_36500111 chr8 121030615 121060964 1 140 1 772 6 0.0168336
SE_02_36500112 chr8 11652509 11666879 1 67 1 414 3 -0.0252512
SE_02_36500113 chr12 7259258 7278919 1 118 2 1019 1 0.0219965
SE_02_36500114 chr17 79288218 79324633 1 77 1 717 5 -0.0383792
SE_02_36500115 chr14 23444847 23477653 1 62 1 270 3 0.140817
SE_02_36500116 chr15 96868402 96903955 1 101 1 609 6 0.241925
SE_02_36500117 chr9 134247761 134281951 1 155 4 771 7 -0.00146185
SE_02_36500118 chr11 68080604 68122311 1 73 2 551 5 -0.0250594
SE_02_36500119 chr8 29939092 29954012 0 67 1 332 2 0.0131696
SE_02_36500120 chr8 28257561 28272156 0 72 2 555 2 0.0225317
SE_02_36500121 chr12 1699189 1716530 1 79 1 552 4 0.0851478
SE_02_36500122 chr17 42610739 42647529 1 99 0 769 6 0.078141
SE_02_36500123 chr12 3112651 3151972 1 72 1 450 4 -0.0243314
SE_02_36500124 chr8 145302579 145332640 1 47 1 528 4 NA
SE_02_36500125 chr20 55796968 55841224 1 100 2 770 6 0.0138872
SE_02_36500126 chr15 40361088 40399746 1 106 2 970 8 0.108486
SE_02_36500127 chr8 141466561 141479352 1 109 2 534 3 0.00944283
SE_02_36500128 chr17 40164073 40178278 1 107 2 494 2 0.0756518
SE_02_36500129 chr2 17967912 17984094 1 129 3 885 2 0.0559075
SE_02_36500130 chr2 25451444 25484047 1 85 3 426 5 0.148377
SE_02_36500131 chr10 42354834 42364119 1 7 0 11 1 NA
SE_02_36500132 chr7 2534020 2573101 1 68 1 584 5 NA
SE_02_36500133 chr1 235089963 235134580 1 148 1 1182 9 0.0416728
SE_02_36500134 chr1 156628970 156662209 1 94 1 1228 5 0.0664292
SE_02_36500135 chr1 155935892 155959998 1 78 2 515 4 0.134066
SE_02_36500136 chr12 57075959 57091127 1 67 1 282 3 0.001994
SE_02_36500137 chr7 104651634 104656499 1 48 0 353 1 0.210241
SE_02_36500138 chr1 2242210 2263402 1 50 1 341 5 -0.0739495
SE_02_36500139 chr8 103871433 103879249 1 54 0 176 2 0.0546141
SE_02_36500140 chr2 20547221 20554222 1 66 2 337 2 0.075448
SE_02_36500141 chr16 29605911 29643944 1 89 1 729 6 -0.00883921
SE_02_36500142 chr19 49630438 49655792 1 74 0 514 4 0.0731302
SE_02_36500143 chr1 11984316 12005590 1 91 2 491 4 0.0217764
SE_02_36500144 chr11 65182659 65196381 0 117 1 768 2 0.0239906
SE_02_36500145 chr19 1017975 1031194 1 97 2 454 3 -0.0456871
SE_02_36500146 chr2 198356473 198370221 1 89 2 393 4 0.0415251
SE_02_36500147 chr7 150058668 150086894 1 125 2 832 6 0.0608196
SE_02_36500148 chr2 39346577 39352758 1 44 0 192 1 0.0841681
SE_02_36500149 chr12 46764643 46779921 1 49 0 174 3 0.0790698
SE_02_36500150 chr8 26428473 26438363 0 64 1 479 3 0.0408501
SE_02_36500151 chr12 6640874 6666695 1 67 1 662 2 0.0739188
SE_02_36500152 chr17 73771887 73784534 1 68 1 582 2 0.112079
SE_02_36500153 chr12 125214701 125262855 1 96 0 455 7 -0.00503551
SE_02_36500154 chr14 35014734 35026780 0 86 0 138 2 -0.0512491
SE_02_36500155 chr17 38258947 38281379 1 87 0 728 5 0.138406
SE_02_36500156 chr2 43011684 43039652 1 85 1 530 5 0.0306066
SE_02_36500157 chr15 93350670 93384337 1 123 2 792 7 0.0161453
SE_02_36500158 chr8 38028587 38036823 0 49 2 254 2 0.0670764
SE_02_36500159 chr14 69255457 69284141 1 90 1 843 3 0.0955403
SE_02_36500160 chr19 13259584 13276600 1 69 0 423 2 0.0252028
SE_02_36500161 chr12 49450305 49465999 1 92 1 641 3 0.156673
SE_02_36500162 chr19 2369732 2403009 1 107 2 672 4 -0.0490459
SE_02_36500163 chr2 70311922 70319367 1 48 0 380 1 0.153253
SE_02_36500164 chr7 5631830 5677539 1 83 2 658 6 0.0026516
SE_02_36500165 chr12 124761484 124783988 1 102 1 871 5 -0.0154495
SE_02_36500166 chr1 157961655 157990384 1 76 2 650 5 0.109894
SE_02_36500167 chr19 1350709 1362744 1 70 1 283 2 -0.0398194
SE_02_36500168 chr6 44210779 44217960 1 53 1 452 1 0.011434
SE_02_36500169 chr19 47610319 47618348 1 52 2 547 2 0.16855
SE_02_36500170 chr20 45976845 45990802 1 61 1 281 2 0.229927
SE_02_36500171 chr14 77489436 77519998 1 130 3 852 5 0.146686
SE_02_36500172 chr12 3293902 3342613 1 110 1 707 4 0.0210241
SE_02_36500173 chr5 180234703 180260252 1 100 2 575 4 -0.0104116
SE_02_36500174 chr21 35570300 35578294 1 73 1 525 1 0.0365677
SE_02_36500175 chr19 50304922 50323189 1 92 1 487 4 0.0681869
SE_02_36500176 chr19 48820554 48837821 1 100 2 401 3 0.0605759
SE_02_36500177 chr12 54386783 54402538 1 73 0 346 1 0.255207
SE_02_36500178 chr8 126438431 126449661 1 54 1 406 1 0.156668
SE_02_36500179 chr10 43890789 43917123 1 61 2 483 4 0.00233992
SE_02_36500180 chr20 36013005 36051337 1 111 1 499 6 0.0309515
SE_02_36500181 chr6 26549653 26574328 1 98 1 656 4 0.00417487
SE_02_36500182 chr6 44182173 44195886 1 83 2 730 1 0.0824054
SE_02_36500183 chr19 14622721 14631670 1 67 2 486 1 0.0520872
SE_02_36500184 chr1 3019924 3056036 1 92 2 515 5 -0.0750505
SE_02_36500185 chr2 27271397 27277195 0 43 1 274 1 0.0701857
SE_02_36500186 chr8 144489230 144521245 1 65 1 460 4 -0.0168054
SE_02_36500187 chr6 53211857 53226133 1 43 0 202 2 0.0588204
SE_02_36500188 chr21 44905382 44937489 1 95 0 568 6 -0.0374951
SE_02_36500189 chr1 145208164 145221806 0 60 0 381 3 0.105453
SE_02_36500190 chr2 110084181 110106008 1 121 2 478 5 -0.0261784
SE_02_36500191 chr18 14130232 14147143 0 86 0 400 2 0.007447
SE_02_36500192 chr1 181055288 181075958 1 88 1 699 6 0.144757
SE_02_36500193 chr1 120599628 120614027 0 64 0 401 3 0.116994
SE_02_36500194 chr1 16964197 16993788 1 50 1 261 4 -0.0171289
SE_02_36500195 chr20 277412 311889 1 86 0 538 4 0.0821174
SE_02_36500196 chr19 41100065 41121849 1 66 0 537 4 0.10907
SE_02_36500197 chr12 108977383 109012833 1 78 1 631 6 0.000829917
SE_02_36500198 chr19 50131889 50147440 0 53 0 364 3 0.0475577
SE_02_36500199 chr1 17222558 17244161 1 67 0 377 4 -0.0472832
SE_02_36500200 chr6 41602034 41625289 1 107 1 1025 8 0.0701346
SE_02_36500201 chr12 4377607 4388403 1 73 1 552 2 0.156114
SE_02_36500202 chr1 23877946 23896468 1 87 0 506 4 0.112765
SE_02_36500203 chr8 28556182 28571864 1 107 1 858 2 0.0339958
SE_02_36500204 chr8 146009936 146019700 0 57 0 564 1 0.00331366
SE_02_36500205 chr12 650049 660959 1 44 0 282 3 -0.0837576
SE_02_36500206 chr16 3988557 4012167 1 126 2 765 5 -0.0141092
SE_02_36500207 chr17 38454339 38479963 1 107 0 1002 4 0.203414
SE_02_36500208 chr11 120054873 120084593 1 101 2 616 5 0.0538409
SE_02_36500209 chr13 31436216 31449254 1 73 1 751 1 0.0616634
SE_02_36500210 chr20 57221763 57241363 1 90 0 578 6 0.108898
SE_02_36500211 chr14 69045706 69075577 1 91 3 603 7 0.0501226
SE_02_36500212 chr17 38217233 38232675 1 73 1 361 3 0.165719
SE_02_36500213 chr1 15251124 15274526 1 64 1 557 2 0.0139618
SE_02_36500214 chr19 49215931 49225617 1 54 1 184 1 0.0553985
SE_02_36500215 chr9 133698098 133736790 1 106 1 650 8 0.0476155
SE_02_36500216 chr12 98884351 98912487 0 77 2 664 4 0.029844
SE_02_36500217 chr12 48143324 48163471 1 115 3 856 1 0.0848559
SE_02_36500218 chr1 161573942 161592404 1 74 0 385 3 0.0176362
SE_02_36500219 chr12 1737083 1771562 1 64 1 390 4 0.000651115
SE_02_36500220 chr17 46795555 46807933 0 67 1 307 1 0.0771517
SE_02_36500221 chr12 3052848 3079005 1 72 1 498 4 0.0063367
SE_02_36500222 chrX 40003719 40036034 1 70 1 420 6 0.149728
SE_02_36500223 chr19 10713087 10738859 1 64 1 411 4 -0.00818414
SE_02_36500224 chr2 20381945 20424613 1 128 1 908 7 0.0379588
SE_02_36500225 chr3 52309396 52318645 0 90 1 699 2 0.063892
SE_02_36500226 chr14 101111200 101148079 1 76 1 517 5 -0.00699416
SE_02_36500227 chr6 30707900 30715805 1 56 0 375 1 0.108449
SE_02_36500228 chr8 128805381 128824906 1 88 2 633 2 -0.0122298
SE_02_36500229 chr1 1621814 1632552 0 56 1 535 2 -0.0117878
SE_02_36500230 chr5 172191719 172202297 1 58 0 534 2 0.125046
SE_02_36500231 chr8 89338109 89341908 1 30 0 169 1 0.222314
SE_02_36500232 chr8 29204349 29211107 1 44 1 478 1 0.0921824
SE_02_36500233 chr9 131900009 131911570 1 47 1 375 3 0.0633063
SE_02_36500234 chr21 47389773 47409545 1 51 3 609 4 -0.0749298
SE_02_36500235 chr8 21893393 21925667 1 60 1 540 4 0.0549793
SE_02_36500236 chr15 60663278 60695463 1 124 2 710 7 0.015617
SE_02_36500237 chr11 62357307 62372931 1 79 1 263 3 0.174195
SE_02_36500238 chr8 33328432 33343562 1 77 3 596 2 -0.0230786
SE_02_36500239 chr8 144436182 144466662 1 54 0 445 5 -0.0406209
SE_02_36500240 chr21 43639052 43658386 1 59 1 448 3 0.00117607
SE_02_36500241 chr18 3445820 3454475 1 43 0 204 1 0.11355
SE_02_36500242 chr8 74882063 74890163 1 74 1 354 1 0.0104025
SE_02_36500243 chr8 27620587 27637830 1 85 1 774 3 0.0496993
SE_02_36500244 chr11 65058202 65084896 1 93 2 603 4 0.0347376
SE_02_36500245 chr8 101962005 101966180 1 29 0 214 1 0.109613
SE_02_36500246 chr8 38320036 38327447 1 44 1 287 1 0.098748
SE_02_36500247 chr19 46269059 46287452 1 58 0 402 3 0.1094
SE_02_36500248 chr18 3592198 3624752 1 104 1 688 4 0.0252079
SE_02_36500249 chr1 154941609 154949155 1 62 0 353 1 0.127141
SE_02_36500250 chr9 124022403 124052766 1 94 0 458 4 0.0757977
SE_02_36500251 chr19 2268616 2275879 1 50 1 461 1 -0.0166381
SE_02_36500252 chr21 40816298 40828948 1 126 2 745 2 0.0343188
SE_02_36500253 chr12 54373218 54383893 1 52 0 603 1 0.241106
SE_02_36500254 chr12 57021982 57031244 1 55 0 334 2 0.163498
SE_02_36500255 chr9 97761903 97792532 1 104 0 733 9 0.0490417

Master TFs Network

CRC model in Sample_02_365