General Details

Sample Id:Sample_02_302
Genome:Homo sapiens-hg19
Series: GSE90683
Biosample Type:Cell line
Tissue Type:Neuroblastoma
Sample Name:IMR32
PMID: 28740262|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_30200001 chr2 29867043 29895201 0 86 1 839 1 0.0436358
SE_02_30200002 chr17 46025858 46102546 0 178 4 1118 4 0.075864
SE_02_30200003 chr4 174406423 174462809 0 159 2 1086 3 0.032872
SE_02_30200004 chr4 41856087 41890370 0 124 1 993 2 0.115797
SE_02_30200005 chr2 66652294 66680759 0 131 1 937 2 0.217105
SE_02_30200006 chr17 55582995 55684705 0 225 4 1337 15 0.0939108
SE_02_30200007 chr13 36039070 36107934 0 143 3 868 8 0.115727
SE_02_30200008 chr4 175112691 175152953 0 107 4 738 2 0.0166386
SE_02_30200009 chr2 182476405 182546835 0 195 7 1446 4 0.0850536
SE_02_30200010 chr4 175030484 175094855 0 155 5 979 5 0.0424307
SE_02_30200011 chr22 46457797 46485794 0 146 2 1105 1 0.0632996
SE_02_30200012 chr1 61321772 61404788 0 183 3 1468 11 0.104559
SE_02_30200013 chr15 78953982 79002697 0 144 5 1093 7 0.0224029
SE_02_30200014 chr17 59456903 59504018 0 137 1 1419 5 0.0951726
SE_02_30200015 chr4 151489185 151522391 0 102 1 639 1 0.21237
SE_02_30200016 chr17 59538503 59575181 0 137 3 895 3 0.100515
SE_02_30200017 chr11 72013318 72085126 0 128 3 1000 8 0.126842
SE_02_30200018 chr17 43022099 43117121 0 179 3 1139 13 0.0659791
SE_02_30200019 chr17 77630758 77683341 0 132 2 868 9 -0.0349686
SE_02_30200020 chr2 85944231 86025116 0 169 4 1656 11 0.0574994
SE_02_30200021 chr3 18457631 18489812 0 114 1 679 1 0.202984
SE_02_30200022 chr2 207993591 208033247 0 119 1 1005 8 0.105731
SE_02_30200023 chr17 75414654 75478226 0 148 5 990 10 -0.0242638
SE_02_30200024 chr17 76915812 76954050 0 115 3 661 5 -0.0318016
SE_02_30200025 chr4 174910131 174993279 0 146 5 1031 7 0.0336611
SE_02_30200026 chr22 49441339 49498720 0 134 1 822 10 -0.105836
SE_02_30200027 chr4 41733641 41758685 0 86 3 586 2 0.0785679
SE_02_30200028 chr15 78906977 78938715 0 87 2 488 4 0.0426515
SE_02_30200029 chr8 13356785 13422580 0 97 2 501 8 0.0321157
SE_02_30200030 chr1 234833850 234885870 0 143 4 1051 7 0.0395582
SE_02_30200031 chr10 8086728 8109650 0 114 2 1215 1 0.0814351
SE_02_30200032 chr4 175178835 175213122 0 139 3 989 3 0.0537338
SE_02_30200033 chr12 124989875 125054839 0 162 3 1087 14 0.00877589
SE_02_30200034 chr1 226873196 226927450 0 116 3 868 10 0.084488
SE_02_30200035 chr1 244209901 244225900 0 93 0 985 2 0.266106
SE_02_30200036 chr9 14300828 14327532 0 130 2 1268 4 0.201552
SE_02_30200037 chr12 39742260 39808829 0 140 2 818 5 0.0871435
SE_02_30200038 chr12 117369061 117418179 0 78 4 554 5 0.0915947
SE_02_30200039 chr7 19128826 19157020 0 80 1 497 3 0.152775
SE_02_30200040 chr17 53487769 53544913 0 125 4 1040 6 0.0510682
SE_02_30200041 chr1 116367868 116386471 0 101 1 638 2 0.110612
SE_02_30200042 chr13 100607250 100649206 0 159 2 1382 6 0.209986
SE_02_30200043 chr17 72073092 72116926 0 123 4 1048 5 -0.0018648
SE_02_30200044 chr15 74511760 74587473 0 157 2 1560 10 0.0302934
SE_02_30200045 chr13 37450150 37496548 0 122 5 793 5 0.052806
SE_02_30200046 chr12 12866277 12880357 0 67 1 494 1 0.158011
SE_02_30200047 chr1 54737480 54824688 0 133 2 1095 13 0.0691122
SE_02_30200048 chr1 53939625 54018619 0 103 3 655 11 0.019598
SE_02_30200049 chr6 110643143 110682232 0 111 3 520 4 0.0844808
SE_02_30200050 chr4 7862062 7914794 0 151 4 1283 9 -0.0394509
SE_02_30200051 chr5 112504170 112583055 0 144 3 938 13 0.0536882
SE_02_30200052 chr12 79308955 79354530 0 126 6 804 5 0.0351069
SE_02_30200053 chr17 59204939 59240719 0 87 1 432 3 0.15971
SE_02_30200054 chr8 93063095 93118964 0 115 1 724 5 0.192783
SE_02_30200055 chr17 55425872 55500169 0 155 1 977 9 0.0946654
SE_02_30200056 chr17 78412362 78430291 0 92 2 593 2 -0.0133652
SE_02_30200057 chr12 117506402 117582147 0 155 4 1031 11 -0.00476786
SE_02_30200058 chr1 160329061 160346877 0 92 1 974 3 0.106791
SE_02_30200059 chr10 21802523 21825007 0 104 0 740 2 0.243641
SE_02_30200060 chr1 234734128 234757639 0 96 1 655 3 0.195736
SE_02_30200061 chr15 45454438 45494081 0 104 1 1032 6 0.103079
SE_02_30200062 chr4 119227851 119275324 0 143 2 793 9 0.0668054
SE_02_30200063 chr6 26186522 26210145 0 87 0 823 1 -0.0469025
SE_02_30200064 chr5 168167387 168216413 0 102 3 759 8 0.049194
SE_02_30200065 chr6 6657548 6725820 0 126 3 1098 11 0.0012112
SE_02_30200066 chr6 123313803 123385931 0 100 1 606 9 0.0416047
SE_02_30200067 chr9 14514016 14566861 0 111 2 779 5 0.0990293
SE_02_30200068 chr1 116887730 116921887 0 98 3 814 4 0.0777532
SE_02_30200069 chr1 198620624 198656208 0 78 2 445 5 0.017877
SE_02_30200070 chr11 65243587 65270105 0 110 2 756 4 0.011333
SE_02_30200071 chr13 43858163 43940721 0 119 2 947 14 0.0989899
SE_02_30200072 chr2 44897964 44942073 0 94 3 589 8 0.178397
SE_02_30200073 chr17 47070541 47092590 0 82 1 735 2 0.13565
SE_02_30200074 chr6 20660448 20711517 0 112 2 892 5 0.0650267
SE_02_30200075 chr5 140872522 140906431 0 91 1 510 5 0.114188
SE_02_30200076 chr11 43913659 43966864 0 128 1 866 6 0.0738972
SE_02_30200077 chr3 149933067 149971792 0 95 1 1093 8 0.0706196
SE_02_30200078 chr1 156820750 156857088 0 106 2 948 9 0.0936261
SE_02_30200079 chr12 55427133 55466338 0 81 2 629 6 0.0563506
SE_02_30200080 chr12 32286492 32317993 0 97 4 542 7 0.0549754
SE_02_30200081 chr10 72972340 73039586 0 124 2 734 10 0.0710794
SE_02_30200082 chr2 109224775 109258730 0 70 2 435 6 0.0197422
SE_02_30200083 chr13 100308395 100348532 0 117 4 536 4 0.114122
SE_02_30200084 chr20 49735469 49783038 0 118 2 939 9 -0.00641155
SE_02_30200085 chr6 26018886 26037931 0 72 2 546 1 -0.0349075
SE_02_30200086 chr12 125136188 125170986 0 132 2 932 7 0.00394602
SE_02_30200087 chr2 74731026 74743366 0 92 2 821 1 0.168962
SE_02_30200088 chr15 93351080 93377058 0 98 2 502 4 0.0303492
SE_02_30200089 chr17 71136210 71165083 0 79 3 641 3 0.016407
SE_02_30200090 chr17 42270872 42300978 0 90 3 913 5 0.146811
SE_02_30200091 chr4 119676153 119740512 0 115 1 902 12 0.0611164
SE_02_30200092 chr12 68709682 68753106 0 93 1 622 7 0.0665926
SE_02_30200093 chr2 38317480 38348899 0 106 3 649 5 0.0384852
SE_02_30200094 chr12 54734285 54788030 0 120 3 650 9 0.160551
SE_02_30200095 chr5 133236143 133275609 0 109 3 652 4 -0.000810349
SE_02_30200096 chr18 52966837 53007418 0 72 4 318 3 0.169846
SE_02_30200097 chr12 79256474 79295342 0 108 3 939 7 0.0571542
SE_02_30200098 chr13 47116594 47160276 0 84 3 745 8 0.0600878
SE_02_30200099 chr4 96433447 96473439 0 94 2 435 8 0.0834802
SE_02_30200100 chr17 42142416 42199343 0 104 2 707 9 0.105443
SE_02_30200101 chr1 53744954 53793643 0 107 1 989 7 0.0756167
SE_02_30200102 chr7 5457924 5470407 0 80 0 928 2 0.119891
SE_02_30200103 chr4 80083073 80135624 0 85 3 682 5 0.0564887
SE_02_30200104 chr17 41470836 41498118 0 111 1 834 6 0.0446499
SE_02_30200105 chr6 56402973 56442544 0 103 0 462 6 0.114952
SE_02_30200106 chr1 181057600 181104958 0 136 6 1045 9 0.0887294
SE_02_30200107 chr5 50675861 50689293 0 59 0 528 1 0.174144
SE_02_30200108 chr4 113859080 113898851 0 108 3 710 6 0.0648929
SE_02_30200109 chr12 55387233 55412630 0 76 2 477 5 0.0508955
SE_02_30200110 chr1 51432718 51449453 0 71 1 493 2 0.208092
SE_02_30200111 chr6 112077376 112117125 0 88 4 856 10 0.0542455
SE_02_30200112 chr17 70767483 70790849 0 63 3 532 2 -0.0176702
SE_02_30200113 chr1 230878827 230909326 0 88 3 756 4 -0.0237044
SE_02_30200114 chr12 122235200 122250744 0 87 0 539 2 0.126202
SE_02_30200115 chr12 14535663 14572248 0 79 1 407 4 0.103335
SE_02_30200116 chr1 156715491 156743367 0 67 0 479 3 0.0902108
SE_02_30200117 chr22 29469008 29504654 0 93 2 970 5 0.111297
SE_02_30200118 chr18 901071 912974 0 53 1 326 1 0.18512
SE_02_30200119 chr11 117720343 117759547 0 105 2 902 6 0.0446889
SE_02_30200120 chr3 29668438 29693176 0 79 2 762 4 0.0507442
SE_02_30200121 chr1 216858210 216898626 0 82 1 568 5 0.159729
SE_02_30200122 chr18 39535106 39571607 0 112 1 703 4 0.0602946
SE_02_30200123 chr9 132241089 132263535 0 100 1 978 3 0.0242755
SE_02_30200124 chr1 204978013 205030996 0 107 4 646 7 0.0707066
SE_02_30200125 chr11 44747770 44816401 0 92 1 1015 11 0.0229595
SE_02_30200126 chr11 70446990 70483813 0 83 2 687 6 -0.0647487
SE_02_30200127 chr10 80910375 80964707 0 95 3 906 9 0.0358659
SE_02_30200128 chr18 46577503 46605764 0 70 3 705 2 0.0427142
SE_02_30200129 chr7 92455878 92469122 0 66 0 606 1 0.14879
SE_02_30200130 chr16 53105043 53135173 0 104 1 518 4 0.0821257
SE_02_30200131 chr15 74213259 74258078 0 92 2 716 6 0.0573599
SE_02_30200132 chr6 27773676 27791876 0 97 2 540 1 -0.0108463
SE_02_30200133 chr8 10190344 10236508 0 93 2 886 8 -0.00765959
SE_02_30200134 chr1 243632923 243672041 0 87 1 513 4 0.0792913
SE_02_30200135 chr22 46447678 46456959 0 50 1 332 1 0.0939204
SE_02_30200136 chr1 50568136 50584447 0 71 0 610 2 0.264037
SE_02_30200137 chr3 149607408 149628543 0 59 1 262 4 0.0937446
SE_02_30200138 chr12 120795915 120806977 0 81 1 514 1 0.162315
SE_02_30200139 chr1 198242479 198268017 0 81 1 503 2 0.122602
SE_02_30200140 chr15 60642275 60669548 0 83 3 466 3 0.0506708
SE_02_30200141 chr9 98255573 98279846 0 84 1 565 2 0.163442
SE_02_30200142 chr3 115750985 115787384 0 80 3 497 5 0.0967067
SE_02_30200143 chr8 93727521 93766321 0 92 2 620 4 0.0952374
SE_02_30200144 chr18 42291626 42326492 0 85 2 712 6 0.0884253
SE_02_30200145 chr2 85631516 85673557 0 111 2 583 6 0.0372509
SE_02_30200146 chr6 21586323 21613538 0 67 0 352 3 0.11324
SE_02_30200147 chr17 64388240 64406082 0 63 3 354 2 0.0413687
SE_02_30200148 chr7 31322683 31351086 0 67 0 501 5 0.106655
SE_02_30200149 chr4 140683705 140755906 0 85 2 449 14 0.102194
SE_02_30200150 chr17 48979997 49034318 0 101 1 552 7 0.0275458
SE_02_30200151 chr17 48766481 48799563 0 80 2 590 4 0.0911331
SE_02_30200152 chr3 29790569 29813122 0 71 0 514 6 0.0633226
SE_02_30200153 chr17 42053670 42066499 0 72 3 501 1 0.0272072
SE_02_30200154 chr6 80517081 80544634 0 45 2 197 3 0.0427892
SE_02_30200155 chr4 77116222 77136098 0 102 2 704 3 0.0228643
SE_02_30200156 chr11 78630629 78674140 0 123 2 667 10 0.113802
SE_02_30200157 chr10 131748286 131765507 0 87 2 694 2 0.276774
SE_02_30200158 chr2 2323907 2338327 0 76 2 510 1 0.128612
SE_02_30200159 chr2 68257548 68278254 0 69 0 385 3 0.123235
SE_02_30200160 chr5 124068274 124086188 0 95 1 612 2 0.29691
SE_02_30200161 chr3 13055395 13089294 0 79 0 944 3 0.0161827
SE_02_30200162 chr18 53072088 53098773 0 69 2 396 3 0.135533
SE_02_30200163 chr17 55944648 55977963 0 80 2 923 5 0.0806206
SE_02_30200164 chr12 39824509 39838977 0 38 0 302 2 0.0810026
SE_02_30200165 chr13 72425877 72446265 0 102 2 471 2 0.203745
SE_02_30200166 chr4 7815186 7835160 0 75 2 771 2 -0.040964
SE_02_30200167 chr5 71566824 71605472 0 75 1 420 7 0.0675792
SE_02_30200168 chr17 55990539 56034360 0 87 1 722 6 0.0831223
SE_02_30200169 chr15 43783803 43812008 0 86 2 640 5 0.102771
SE_02_30200170 chr6 32935001 32943248 0 75 1 733 2 0.118867
SE_02_30200171 chr17 75359575 75397394 0 75 1 447 7 -0.00915194
SE_02_30200172 chr17 52847953 52872707 0 54 2 263 2 0.0854887
SE_02_30200173 chr1 114299021 114313963 0 77 1 451 1 0.179389
SE_02_30200174 chr6 159164765 159193636 0 90 1 980 5 -0.0196951
SE_02_30200175 chr6 37452135 37489786 0 75 0 506 6 0.061336
SE_02_30200176 chr17 7782268 7793674 0 63 0 769 1 0.192805
SE_02_30200177 chr7 135451292 135461976 0 34 0 112 1 0.0345551
SE_02_30200178 chr14 77379441 77424625 0 87 4 523 6 0.0401315
SE_02_30200179 chr6 6616070 6635466 0 57 2 485 3 0.0329972
SE_02_30200180 chr6 114174923 114182573 0 47 2 280 2 0.197197
SE_02_30200181 chr20 52201911 52241061 0 96 1 722 6 0.0603652
SE_02_30200182 chr11 63677290 63712469 0 99 4 543 6 0.0813909
SE_02_30200183 chr1 198495479 198514503 0 66 3 450 3 0.0378343
SE_02_30200184 chr4 41784436 41801854 0 63 0 323 3 0.080077
SE_02_30200185 chr5 53964897 54008408 0 68 0 703 5 0.0564296
SE_02_30200186 chr9 97764443 97776833 0 80 3 547 3 0.0734279
SE_02_30200187 chrX 15435407 15486463 0 73 4 370 8 0.0614014
SE_02_30200188 chr17 57227573 57234884 0 33 3 276 1 0.116654
SE_02_30200189 chr5 106977443 107009775 0 69 1 409 4 0.146055
SE_02_30200190 chr9 72719283 72751471 0 74 3 481 4 0.0786443
SE_02_30200191 chr9 38413212 38426192 0 57 0 527 2 0.0638414
SE_02_30200192 chr2 189154838 189174086 0 37 1 342 2 0.076439
SE_02_30200193 chr19 13259982 13283712 0 108 4 883 4 0.00939366
SE_02_30200194 chr4 113430462 113463363 0 99 2 621 7 0.108116
SE_02_30200195 chr11 68424509 68454306 0 97 3 917 4 -0.0414381
SE_02_30200196 chr4 53810267 53826609 0 62 2 519 2 0.0180837
SE_02_30200197 chr15 46557637 46575511 0 61 2 327 2 0.0796277
SE_02_30200198 chr13 51463592 51487370 0 58 2 292 2 0.0685356
SE_02_30200199 chr20 30543733 30580483 0 96 2 1198 6 0.0756891
SE_02_30200200 chr8 93618482 93663126 0 66 1 673 7 0.115208
SE_02_30200201 chr1 151030086 151037764 0 38 0 172 2 0.113006
SE_02_30200202 chr13 97761247 97794603 0 78 0 773 6 0.054598
SE_02_30200203 chr6 159061193 159078362 0 82 3 903 3 0.00153148
SE_02_30200204 chr3 29308794 29330399 0 61 1 387 3 0.104727
SE_02_30200205 chr8 85159750 85202404 0 63 1 317 7 0.0409741
SE_02_30200206 chr11 71948061 71956905 0 68 1 494 2 0.0943457
SE_02_30200207 chr8 29626682 29674004 0 130 2 875 4 0.04021
SE_02_30200208 chr5 153853769 153868651 0 73 4 434 2 0.0924526
SE_02_30200209 chr13 43684041 43745567 0 75 1 337 7 0.0489527
SE_02_30200210 chr3 58809978 58850374 0 66 0 313 5 0.0910797
SE_02_30200211 chr21 16429841 16455277 0 72 0 439 4 0.111606
SE_02_30200212 chr1 216766655 216791479 0 76 1 422 3 0.155999
SE_02_30200213 chr7 135395951 135429548 0 56 1 337 5 0.0272189
SE_02_30200214 chr1 243857217 243880922 0 74 2 179 2 0.112266
SE_02_30200215 chr17 47857067 47867279 0 56 1 422 2 0.127053
SE_02_30200216 chr1 112270961 112292380 0 55 0 522 3 0.109036
SE_02_30200217 chr12 125225173 125251837 0 77 1 465 6 0.00139447
SE_02_30200218 chr5 167588556 167627417 0 89 3 692 7 0.0816583
SE_02_30200219 chr16 85644872 85687510 0 115 3 688 6 -0.0476509
SE_02_30200220 chr7 23506323 23517196 0 66 0 377 1 0.160581
SE_02_30200221 chr17 38458746 38479445 0 95 2 726 4 0.222922

Master TFs Network

CRC model in Sample_02_302