General Details

Sample Id:Sample_02_271
Genome:Homo sapiens-hg19
Series: GSE86091
Biosample Type:Cell line
Tissue Type:Kidney
Sample Name:20431713N
PMID: 28893800|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_27100001 chr1 564386 570409 0 44 0 103 1 -0.0202987
SE_02_27100002 chr19 39145238 39176302 0 49 0 521 8 0.0740856
SE_02_27100003 chr11 65243970 65273036 0 36 0 322 8 0.0428039
SE_02_27100004 chr2 105459977 105488785 0 43 0 264 8 0.198509
SE_02_27100005 chr3 46984359 47003158 0 11 0 48 4 0.0660017
SE_02_27100006 chr12 54380215 54396732 0 23 0 105 4 0.247458
SE_02_27100007 chr15 96878549 96893528 0 31 0 305 5 0.301784
SE_02_27100008 chr1 150532769 150550022 0 15 0 54 4 0.0741232
SE_02_27100009 chr11 117690601 117705184 0 27 0 407 3 0.0104354
SE_02_27100010 chr5 139016577 139040480 0 31 0 256 8 0.150845
SE_02_27100011 chr10 119306478 119307983 0 6 0 44 1 0.110639
SE_02_27100012 chr12 120107449 120134887 0 15 0 50 7 0.0952033
SE_02_27100013 chr9 133975025 133998954 0 26 0 210 6 0.0302091
SE_02_27100014 chr7 27150317 27163284 0 20 0 198 2 0.203895
SE_02_27100015 chr9 132248237 132261676 0 14 0 66 4 0.019665
SE_02_27100016 chr22 46451868 46479388 0 41 0 219 7 0.0910907
SE_02_27100017 chr11 33712230 33718294 0 20 0 255 2 0.0110245
SE_02_27100018 chr7 27177275 27193419 0 29 0 191 6 0.252588
SE_02_27100019 chr9 129481201 129484720 0 24 0 103 3 0.0155843
SE_02_27100020 chr7 47612132 47627574 0 16 0 242 3 0.0248131
SE_02_27100021 chr1 21956957 21969622 0 25 0 145 7 0.0516497
SE_02_27100022 chr11 34644456 34664466 0 12 0 66 3 0.0558171
SE_02_27100023 chr21 35356882 35357684 0 6 0 23 1 -0.0380849
SE_02_27100024 chr17 48982945 48997702 0 17 0 59 5 0.0318391

Master TFs Network

CRC model in Sample_02_271