General Details

Sample Id:Sample_02_214
Genome:Homo sapiens-hg19
Series: GSE76626
Biosample Type:Stem cell
Tissue Type:Embryo
Sample Name:H9_WT
PMID: 27926872|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_21400001 chr1 16944999 16985193 10 111 0 829 5 -0.0189985
SE_02_21400002 chr5 744976 775334 0 32 0 130 7 -0.130333
SE_02_21400003 chr7 76603638 76634297 0 44 0 345 4 0.00848406
SE_02_21400004 chr7 76105539 76134339 0 40 0 498 4 -0.00389924
SE_02_21400005 chr9 117084805 117096766 4 33 0 295 2 -0.0255343
SE_02_21400006 chr5 837158 849073 0 11 0 42 4 -0.125874
SE_02_21400007 chr16 30199797 30212038 1 24 0 161 2 0.017778
SE_02_21400008 chr22 42519915 42533749 0 9 0 168 2 -0.0235184
SE_02_21400009 chr1 205269936 205283258 13 17 0 532 2 0.0819225
SE_02_21400010 chr6 37093395 37105641 13 25 0 686 2 0.0712541
SE_02_21400011 chr2 133025232 133026465 6 19 0 278 1 -0.103107
SE_02_21400012 chr2 112203021 112211976 0 34 0 231 2 0.0663957
SE_02_21400013 chr2 87795960 87804909 0 34 0 231 2 0.0611754
SE_02_21400014 chr22 42962397 42973331 0 14 0 105 2 -0.0706297
SE_02_21400015 chr18 44545533 44554112 1 25 0 327 2 -0.181027
SE_02_21400016 chr12 6432720 6445653 9 6 0 207 2 0.048779
SE_02_21400017 chr17 42172516 42179870 5 33 0 392 2 0.0637982
SE_02_21400018 chr14 35015368 35026146 2 6 0 28 2 -0.0502802
SE_02_21400019 chr1 17274944 17281091 0 9 0 79 2 0.0301574
SE_02_21400020 chr7 74507747 74510406 2 29 0 507 1 0.106024
SE_02_21400021 chr6 34191000 34203054 4 5 0 129 2 0.0660003
SE_02_21400022 chr22 39569700 39572962 11 32 0 568 2 0.0544664
SE_02_21400023 chr6 43057339 43065196 5 12 0 239 2 0.119732
SE_02_21400024 chr7 102254754 102265380 0 7 0 87 2 0.0184248
SE_02_21400025 chr17 76365566 76371620 3 10 0 220 2 0.00643522
SE_02_21400026 chr8 8030532 8034866 0 17 0 186 1 NA
SE_02_21400027 chr7 102155775 102166290 0 7 0 87 2 0.0208196
SE_02_21400028 chr10 95196980 95205755 5 22 0 312 2 0.0412926
SE_02_21400029 chr1 144981785 144985704 1 36 0 181 1 0.0602932
SE_02_21400030 chr11 70186550 70191547 0 7 0 30 2 -0.0233315

Master TFs Network

CRC model in Sample_02_214