General Details

Sample Id:Sample_02_203
Genome:Homo sapiens-hg19
Series: GSE75898
Biosample Type:Cell line
Tissue Type:Stomach
Sample Name:YCC21
PMID: 27677335|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_20300001 chr17 39926132 39957896 0 88 1 568 3 0.0517275
SE_02_20300002 chr17 41607511 41635650 0 89 0 502 3 0.0713142
SE_02_20300003 chr17 57903942 57942795 0 91 0 747 10 0.0548275
SE_02_20300004 chr3 171812614 171873480 0 139 1 1108 14 0.0557876
SE_02_20300005 chr7 55051957 55068299 0 87 2 456 1 0.00161367
SE_02_20300006 chr11 69025722 69070464 0 109 0 1004 7 -0.00562755
SE_02_20300007 chr7 54999192 55019778 0 37 1 191 2 0.0327303
SE_02_20300008 chr7 55431406 55437241 0 21 0 434 1 0.0132144
SE_02_20300009 chr7 54944527 54952340 0 30 0 514 1 0.0242783
SE_02_20300010 chr3 149056927 149121677 0 108 0 1143 11 0.0465111
SE_02_20300011 chr20 30281901 30311443 0 98 1 967 12 0.129101
SE_02_20300012 chr8 128577265 128604518 0 50 0 278 7 -0.00753144
SE_02_20300013 chr17 70384048 70427107 0 132 1 927 21 0.0351187
SE_02_20300014 chr1 235091000 235135256 0 123 1 985 12 0.041169
SE_02_20300015 chr8 128216598 128238587 0 73 0 779 7 0.0336252
SE_02_20300016 chr8 128305169 128324414 0 43 0 544 2 NA
SE_02_20300017 chr18 19659656 19709797 0 85 0 1066 11 0.0374252
SE_02_20300018 chr17 16912428 16936115 0 69 1 703 9 -0.0462628
SE_02_20300019 chr8 95446236 95454540 0 44 1 445 2 0.169291
SE_02_20300020 chr20 52352151 52404698 0 86 0 675 9 0.01688
SE_02_20300021 chr18 20675806 20688248 0 49 1 399 3 -0.00147361
SE_02_20300022 chr6 30714604 30751453 0 74 0 597 5 NA
SE_02_20300023 chr17 57857640 57882265 0 91 0 424 4 0.038584
SE_02_20300024 chr2 54787213 54828671 0 76 0 388 13 0.0769676
SE_02_20300025 chr10 3780035 3826904 0 98 0 877 17 -0.0653308
SE_02_20300026 chr17 39677093 39688017 0 38 0 370 4 0.0537747
SE_02_20300027 chr2 111056960 111078094 0 62 0 435 5 -0.00141023
SE_02_20300028 chr2 110808525 110820032 0 57 0 398 3 0.00123447
SE_02_20300029 chr7 55129742 55135475 0 24 0 301 1 -0.00780843
SE_02_20300030 chr20 50358747 50383829 0 85 0 712 9 -0.0109908
SE_02_20300031 chr11 68064782 68122943 0 76 0 649 10 -0.0250578
SE_02_20300032 chr20 52195280 52240979 0 87 1 653 11 0.0619144
SE_02_20300033 chr18 47206184 47224757 0 57 0 451 8 0.0385521
SE_02_20300034 chr7 130570062 130610858 0 76 0 402 17 0.0313098
SE_02_20300035 chr19 39172960 39185861 0 62 0 722 5 0.048712
SE_02_20300036 chr15 101251545 101273539 0 51 0 369 5 -0.000213886
SE_02_20300037 chr10 4703890 4746078 0 71 0 450 7 -0.0266586
SE_02_20300038 chr8 128489431 128525182 0 84 1 719 8 0.0165437
SE_02_20300039 chr12 53300024 53322538 0 55 0 471 7 0.0240463
SE_02_20300040 chr11 65238896 65269159 0 89 0 522 17 0.00166675
SE_02_20300041 chr10 5586019 5596602 0 55 0 728 3 -0.0596465
SE_02_20300042 chr8 8144976 8172471 0 40 1 389 8 0.00859918
SE_02_20300043 chr17 70599426 70632625 0 64 0 347 9 0.00510744
SE_02_20300044 chr1 151907253 151973365 0 107 0 742 17 0.0632061
SE_02_20300045 chr6 12311774 12350318 0 50 0 361 13 0.0260645
SE_02_20300046 chr1 201976347 202028270 0 61 0 434 9 0.0153104
SE_02_20300047 chr11 34644482 34677391 0 64 1 464 10 0.0630208
SE_02_20300048 chr3 193559401 193603866 0 62 1 372 8 0.0240347
SE_02_20300049 chr7 55759347 55767804 0 39 1 155 1 0.0308086
SE_02_20300050 chr10 71185233 71229885 0 77 1 255 12 0.0353235
SE_02_20300051 chr17 15545418 15563747 0 76 0 975 11 0.0396588
SE_02_20300052 chr1 156066690 156100079 0 98 0 939 10 0.0863657
SE_02_20300053 chr10 3506998 3529651 0 39 0 166 6 -0.0921817
SE_02_20300054 chr11 68139805 68151479 0 62 0 275 4 -0.0477359
SE_02_20300055 chr10 9269708 9308871 0 44 0 297 11 0.0254153
SE_02_20300056 chr8 128276341 128290862 0 16 0 73 2 0.0319543
SE_02_20300057 chr14 50453144 50485767 0 72 0 483 6 0.0419314
SE_02_20300058 chr17 63274613 63291310 0 43 0 371 7 0.0193376
SE_02_20300059 chr14 50411382 50440627 0 65 0 616 8 0.053851
SE_02_20300060 chr18 3595917 3626142 0 63 0 291 6 0.013195
SE_02_20300061 chr8 8930315 8940176 0 54 0 357 4 0.0555861
SE_02_20300062 chr1 228965804 228987719 0 62 0 758 7 -0.00204472
SE_02_20300063 chr11 72279735 72285419 0 29 0 204 2 0.0357196
SE_02_20300064 chr3 171495230 171526520 0 50 0 321 9 0.029386
SE_02_20300065 chr8 102574759 102592094 0 42 1 377 4 0.0732279
SE_02_20300066 chr12 15780001 15792174 0 61 0 366 8 0.110095
SE_02_20300067 chr11 67857149 67876160 0 40 0 522 5 0.0373464
SE_02_20300068 chr15 60662518 60702015 0 78 0 348 12 0.0146475
SE_02_20300069 chr6 3379200 3411304 0 45 0 448 6 0.0195066
SE_02_20300070 chr1 207174967 207205873 0 75 1 761 10 0.0645848
SE_02_20300071 chr1 94780708 94793369 0 69 1 577 3 0.0659059
SE_02_20300072 chr3 111622029 111660156 0 61 1 228 16 0.0714696
SE_02_20300073 chr16 82020187 82040506 0 43 0 285 10 0.0450485
SE_02_20300074 chr3 156533022 156546356 0 37 0 261 6 0.076321
SE_02_20300075 chr3 65936755 65951887 0 78 0 407 7 0.0374342
SE_02_20300076 chr11 12087036 12116150 0 55 0 541 8 0.0308545
SE_02_20300077 chr8 102449457 102479963 0 41 0 712 4 0.0247636
SE_02_20300078 chr3 193830493 193860478 0 76 0 684 13 0.105063
SE_02_20300079 chr17 57830324 57840785 0 34 0 202 4 0.0927968
SE_02_20300080 chr12 13023641 13056911 0 54 1 260 11 0.00732419
SE_02_20300081 chr19 52047665 52055416 0 28 0 169 5 -0.02387
SE_02_20300082 chr11 67112212 67124623 0 60 0 400 2 0.0780038
SE_02_20300083 chr20 30180769 30199897 0 91 0 883 5 0.0457763
SE_02_20300084 chr2 61238989 61246094 0 24 0 137 4 0.0534347
SE_02_20300085 chr5 73685648 73716401 0 56 0 277 14 0.0875656
SE_02_20300086 chr11 86285155 86318426 0 84 0 651 12 0.065616
SE_02_20300087 chr11 12180515 12190063 0 29 0 342 4 0.0571227
SE_02_20300088 chr18 19599697 19626629 0 43 0 346 4 0.0238611
SE_02_20300089 chr17 5724163 5740681 0 54 0 313 10 0.0131071
SE_02_20300090 chr18 47112496 47152497 0 49 0 337 16 0.0277197
SE_02_20300091 chr1 8229243 8277895 0 73 0 498 14 -0.0392994
SE_02_20300092 chr2 47257541 47271494 0 38 0 229 5 0.0580461
SE_02_20300093 chr17 55471950 55522417 0 74 0 518 17 0.092511
SE_02_20300094 chr16 29261594 29277497 0 43 0 436 4 -0.027821
SE_02_20300095 chr10 3844261 3854336 0 45 0 565 5 -0.0235746
SE_02_20300096 chr17 16761687 16770033 0 37 0 513 4 -0.0470498
SE_02_20300097 chr13 73629493 73650836 0 52 0 460 12 0.169931
SE_02_20300098 chr5 399160 415607 0 32 1 128 3 -0.07014
SE_02_20300099 chr2 65600297 65649298 0 40 0 374 15 0.0908818
SE_02_20300100 chr19 33522626 33546373 0 60 0 273 10 -0.00944796
SE_02_20300101 chr11 1693952 1715587 0 60 1 227 12 -0.103271
SE_02_20300102 chrX 106159282 106184537 0 37 0 379 7 0.094212
SE_02_20300103 chr12 71538354 71558536 0 47 0 173 4 0.0731962
SE_02_20300104 chr6 159268915 159291782 0 46 0 155 9 0.0264288
SE_02_20300105 chr14 55588133 55595865 0 54 0 669 2 0.027623
SE_02_20300106 chr20 58400502 58422616 0 35 0 295 6 0.0228997
SE_02_20300107 chr14 71582631 71611425 0 54 0 643 13 0.0211254
SE_02_20300108 chr2 110858334 110873122 0 59 0 604 8 0.0108995
SE_02_20300109 chr12 27425299 27444546 0 44 0 550 10 0.0875084
SE_02_20300110 chr1 234734286 234749460 0 43 0 234 10 0.221284
SE_02_20300111 chr20 10680574 10702246 0 42 0 291 10 0.0996321
SE_02_20300112 chr18 20044760 20049413 0 31 0 241 2 0.0387772
SE_02_20300113 chr12 15717611 15757243 0 28 0 147 10 0.0427161
SE_02_20300114 chr18 47247555 47258209 0 43 0 177 5 0.0133346
SE_02_20300115 chr2 101379435 101403546 0 42 0 394 7 0.0230613

Master TFs Network

CRC model in Sample_02_203