General Details

Sample Id:Sample_02_201
Genome:Homo sapiens-hg19
Series: GSE75898
Biosample Type:Cell line
Tissue Type:Stomach
Sample Name:MKN7
PMID: 27677335|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_20100001 chr17 37893682 37944672 0 104 1 709 4 0.112471
SE_02_20100002 chr11 12184443 12206434 0 86 1 746 12 0.0343147
SE_02_20100003 chr18 21404184 21451482 0 78 0 472 11 0.0492556
SE_02_20100004 chr14 65704634 65731234 0 51 0 282 4 0.0277179
SE_02_20100005 chr19 39172953 39185296 0 71 0 731 5 0.0498769
SE_02_20100006 chr17 37852659 37864751 0 58 0 421 3 0.0943589
SE_02_20100007 chr20 30279067 30316074 0 71 1 811 12 0.11257
SE_02_20100008 chr2 54781980 54802719 0 51 0 327 7 0.0993403
SE_02_20100009 chr20 56263904 56284096 0 70 1 627 11 -0.012216
SE_02_20100010 chr14 62004712 62052258 0 59 0 483 14 0.0657792
SE_02_20100011 chr19 30309664 30337012 0 56 0 238 3 0.00456408
SE_02_20100012 chr17 37351542 37359287 0 59 0 408 3 0.072298
SE_02_20100013 chr5 33809305 33856846 0 47 0 314 10 0.0394991
SE_02_20100014 chr14 51998163 52024921 0 60 1 485 9 0.0416327
SE_02_20100015 chr11 12087970 12113347 0 46 1 390 7 0.0342273
SE_02_20100016 chr7 39630399 39661135 0 48 0 437 10 0.0646929
SE_02_20100017 chr14 50464949 50480152 0 59 1 441 5 0.0336377
SE_02_20100018 chr19 39138630 39158619 0 83 0 676 9 0.091684
SE_02_20100019 chr6 159126695 159160056 0 60 0 341 7 -0.0197494
SE_02_20100020 chr11 65239676 65269182 0 60 2 332 7 0.000737862
SE_02_20100021 chr17 57905143 57924801 0 54 0 182 6 0.0817486
SE_02_20100022 chr17 38666994 38689455 0 56 1 444 5 0.0677227
SE_02_20100023 chr19 52286878 52313159 0 75 1 574 10 -0.00347431
SE_02_20100024 chr11 122027609 122069161 0 43 0 298 5 0.1013
SE_02_20100025 chr14 69148207 69164492 0 30 0 182 8 0.0587767
SE_02_20100026 chr20 42800702 42818679 0 66 0 445 4 0.0405003
SE_02_20100027 chr1 95081587 95115187 0 54 0 421 8 0.0132277
SE_02_20100028 chr17 42884336 42906893 0 52 0 400 6 0.0142597
SE_02_20100029 chr19 13950786 13972755 0 90 2 518 13 0.0264407
SE_02_20100030 chr11 114155358 114169409 0 43 0 467 4 0.0599911
SE_02_20100031 chr21 43182355 43208381 0 60 2 537 5 -0.0458066
SE_02_20100032 chr3 57954028 57987224 0 42 0 193 7 0.014462
SE_02_20100033 chr17 48125166 48142491 0 55 0 391 4 0.0822703
SE_02_20100034 chr1 156074985 156099708 0 83 2 913 7 0.0895741
SE_02_20100035 chr11 9586160 9598555 0 57 0 282 3 0.0973991
SE_02_20100036 chr14 68925751 68946741 0 66 0 237 7 0.118939
SE_02_20100037 chr17 45577971 45592063 0 42 0 503 5 0.0432123
SE_02_20100038 chr1 234734507 234749134 0 44 1 235 7 0.226225
SE_02_20100039 chr20 52352762 52370608 0 37 0 120 4 0.0511022
SE_02_20100040 chr17 42613324 42634760 0 47 0 219 5 0.0738638
SE_02_20100041 chr11 128388737 128396457 0 27 1 260 3 0.14875
SE_02_20100042 chr19 11195120 11206595 0 68 0 718 3 -0.0504534
SE_02_20100043 chr7 22602096 22623082 0 49 0 315 8 0.0500629
SE_02_20100044 chr5 139631262 139641883 0 39 0 191 5 0.0856595
SE_02_20100045 chr20 52739225 52757644 0 35 0 332 5 0.00678812
SE_02_20100046 chr8 119848163 119864255 0 36 0 187 6 0.0284231
SE_02_20100047 chr14 69256485 69262661 0 33 0 342 2 0.168654
SE_02_20100048 chr6 47073667 47085563 0 53 0 294 5 0.0235215
SE_02_20100049 chr17 15544854 15562783 0 55 0 531 5 0.0393109
SE_02_20100050 chr8 102448992 102472214 0 26 0 327 4 0.0209038
SE_02_20100051 chr11 118782858 118795563 0 51 1 370 6 0.189696
SE_02_20100052 chr22 24596737 24605998 0 19 0 95 2 -0.0122749
SE_02_20100053 chr22 30000058 30023881 0 43 0 191 8 0.0419874
SE_02_20100054 chr11 12222161 12231095 0 22 0 270 4 0.0725834
SE_02_20100055 chr11 96039338 96059268 0 21 0 133 3 0.0689445
SE_02_20100056 chr20 45943369 45951015 0 32 1 180 1 0.0428561
SE_02_20100057 chr6 11414750 11427503 0 23 0 99 2 0.0250285
SE_02_20100058 chr1 207175477 207203083 0 44 0 528 6 0.0601952
SE_02_20100059 chr11 65669613 65684478 0 54 1 400 4 0.0295773
SE_02_20100060 chr11 28779013 28792459 0 27 0 269 6 0.0480247
SE_02_20100061 chr8 49539876 49553804 0 49 1 307 5 -0.012223
SE_02_20100062 chr6 10399866 10411081 0 35 0 110 6 0.278481
SE_02_20100063 chr15 74671407 74690075 0 38 0 345 4 0.0030931
SE_02_20100064 chr13 113366003 113380303 0 61 0 506 4 -0.0517394
SE_02_20100065 chr6 10429409 10452544 0 45 1 343 6 0.0200319
SE_02_20100066 chr13 109896251 109918911 0 40 0 206 4 NA
SE_02_20100067 chr6 14731918 14747514 0 14 0 123 4 0.0510661
SE_02_20100068 chr8 119015426 119032148 0 20 0 229 4 0.0342743
SE_02_20100069 chr8 38785556 38798130 0 33 1 333 3 0.0169305
SE_02_20100070 chr6 72095925 72122596 0 19 0 56 7 0.0468984
SE_02_20100071 chr17 37616023 37620540 0 35 1 165 1 0.174975
SE_02_20100072 chr12 122222622 122241078 0 38 1 193 4 0.0481828
SE_02_20100073 chr8 128221238 128238719 0 19 0 146 4 0.0414689
SE_02_20100074 chr2 70358548 70370931 0 39 0 562 5 0.03741
SE_02_20100075 chr8 129180774 129198534 0 46 0 297 5 0.0303449
SE_02_20100076 chr20 52444258 52447837 0 27 0 192 2 0.0866702
SE_02_20100077 chr19 13262656 13279958 0 66 1 465 5 0.0163868
SE_02_20100078 chr17 16914387 16933213 0 33 2 404 7 -0.0572537
SE_02_20100079 chr20 52194974 52211899 0 43 0 440 7 0.102808
SE_02_20100080 chr17 70389941 70418953 0 44 0 485 5 0.0484151
SE_02_20100081 chr3 38192355 38210805 0 30 0 270 5 0.0598008
SE_02_20100082 chr6 11388096 11396433 0 34 1 203 5 0.0341366
SE_02_20100083 chr17 36431531 36443534 0 38 0 290 3 0.0459239
SE_02_20100084 chr6 159270148 159290728 0 37 0 175 5 0.0282287
SE_02_20100085 chr16 22597190 22610341 0 25 0 139 3 0.0457489
SE_02_20100086 chr6 35357138 35371379 0 31 0 193 5 0.0446683
SE_02_20100087 chr14 68604632 68613936 0 49 1 424 5 0.162467
SE_02_20100088 chr14 50360056 50375892 0 30 0 252 3 0.121839
SE_02_20100089 chr16 21781051 21794225 0 23 0 123 3 0.0375019
SE_02_20100090 chr9 114781091 114805393 0 29 0 357 5 0.042644
SE_02_20100091 chr19 35807919 35812077 0 26 1 187 1 -0.0107521
SE_02_20100092 chr19 41726966 41732947 0 29 0 207 4 0.0318515
SE_02_20100093 chr19 12889445 12905473 0 32 0 157 5 0.123165
SE_02_20100094 chr7 44414290 44427246 0 22 1 225 5 0.0621268
SE_02_20100095 chr12 95593340 95607229 0 40 1 307 4 0.0790669
SE_02_20100096 chr20 48854041 48869281 0 22 0 296 3 0.0414002
SE_02_20100097 chr11 69234069 69259846 0 27 0 213 5 -0.0560052
SE_02_20100098 chr15 101252074 101265451 0 46 1 347 6 -0.00155517
SE_02_20100099 chr20 48200093 48222345 0 20 1 72 3 -0.00864559
SE_02_20100100 chr11 67007348 67015855 0 24 0 291 2 0.152563
SE_02_20100101 chr15 90363010 90392718 0 32 1 120 5 0.0136971
SE_02_20100102 chr19 45243780 45258598 0 32 0 124 2 0.0344613
SE_02_20100103 chr18 3599367 3606436 0 29 0 169 2 0.0421827
SE_02_20100104 chr11 128075873 128081834 0 31 0 234 4 0.0529722
SE_02_20100105 chr12 12870363 12876811 0 21 0 290 4 0.194532
SE_02_20100106 chr6 74289120 74296402 0 13 0 41 3 0.0216779
SE_02_20100107 chr18 61534294 61551276 0 30 0 361 8 0.0178825
SE_02_20100108 chr8 40198651 40209341 0 34 1 205 6 0.000337835
SE_02_20100109 chr8 145009796 145023341 0 35 1 336 3 0.00612731
SE_02_20100110 chr17 37974634 37978557 0 27 0 159 1 0.0913395
SE_02_20100111 chr11 126860512 126868676 0 24 0 190 4 0.0827105
SE_02_20100112 chr20 45986537 45990507 0 21 0 133 2 0.132833
SE_02_20100113 chr3 139021084 139033210 0 22 2 349 3 0.0762262
SE_02_20100114 chr14 69002330 69016197 0 19 1 109 3 0.11998
SE_02_20100115 chr8 94885402 94892852 0 37 0 390 3 0.056915
SE_02_20100116 chr18 3621524 3626436 0 21 1 63 3 0.0101007
SE_02_20100117 chr2 20778811 20795033 0 27 2 319 4 0.0114722
SE_02_20100118 chr21 43053401 43064518 0 26 0 122 4 -0.0230206
SE_02_20100119 chr6 11765730 11772930 0 28 0 171 3 0.066193
SE_02_20100120 chr5 150452280 150475551 0 23 1 193 3 0.0528271
SE_02_20100121 chr15 70784454 70796871 0 29 1 294 4 0.00719576
SE_02_20100122 chr10 11923777 11941530 0 23 0 269 5 -0.0410713
SE_02_20100123 chr6 160647456 160670313 0 30 1 483 3 0.0150119
SE_02_20100124 chr1 202073114 202082049 0 39 0 262 2 0.020349
SE_02_20100125 chr20 61856242 61865347 0 33 1 230 2 -0.0315109
SE_02_20100126 chr11 12244846 12258433 0 16 0 189 3 0.0543131
SE_02_20100127 chr6 37100787 37105656 0 21 0 165 2 0.0848823
SE_02_20100128 chr14 75033151 75047509 0 33 0 195 4 0.0442796
SE_02_20100129 chr1 68355560 68364934 0 17 0 332 4 0.06125
SE_02_20100130 chr13 97844147 97858903 0 24 0 366 3 0.0658137
SE_02_20100131 chr7 23506294 23515646 0 47 0 236 3 0.163007
SE_02_20100132 chr14 71584455 71610569 0 26 0 457 4 0.0194911
SE_02_20100133 chr1 152007123 152021590 0 45 0 563 2 0.0391422
SE_02_20100134 chr20 43965815 43974522 0 54 1 452 5 0.138302
SE_02_20100135 chr1 16467181 16481027 0 32 1 304 4 0.110515
SE_02_20100136 chr19 36622876 36628975 0 14 0 39 3 0.0306286
SE_02_20100137 chr18 2515086 2531055 0 24 1 162 3 0.0599453
SE_02_20100138 chr20 62312843 62331892 0 50 1 861 4 -0.0708097
SE_02_20100139 chr9 114827344 114837648 0 43 0 392 6 0.0107092
SE_02_20100140 chr7 27716754 27718860 0 13 1 124 1 0.0524188
SE_02_20100141 chr2 70584902 70610037 0 22 0 137 5 0.059716
SE_02_20100142 chr14 22750504 22766719 0 19 1 92 4 0.057036
SE_02_20100143 chr14 69085549 69096839 0 30 0 129 3 0.0925196
SE_02_20100144 chr15 58760600 58766772 0 33 2 172 3 -0.00764998
SE_02_20100145 chr14 49970449 49981247 0 29 0 227 6 0.047467
SE_02_20100146 chr7 26192878 26199104 0 52 1 309 4 0.064904
SE_02_20100147 chrX 103568014 103578760 0 27 0 173 4 0.0548585
SE_02_20100148 chr2 173694617 173703114 0 18 0 47 2 0.0614964
SE_02_20100149 chr5 64484411 64505615 0 19 0 78 4 0.13654
SE_02_20100150 chr11 77789588 77793672 0 12 1 97 1 NA
SE_02_20100151 chr11 128317900 128337662 0 25 0 103 4 0.0730122
SE_02_20100152 chr14 68973457 68988516 0 13 0 89 2 0.104796
SE_02_20100153 chr20 46019882 46023228 0 20 0 98 1 0.00649622
SE_02_20100154 chr17 18622084 18626825 0 36 0 414 1 0.039356
SE_02_20100155 chr3 192596437 192612674 0 11 0 48 4 0.0421813
SE_02_20100156 chr11 28853205 28864553 0 34 2 217 4 0.0550939
SE_02_20100157 chr12 104982960 104999895 0 24 1 294 4 0.0289042
SE_02_20100158 chr20 60932467 60940003 0 54 1 422 3 -0.044873
SE_02_20100159 chr20 43356405 43362128 0 29 0 82 2 -0.0111737
SE_02_20100160 chr17 37791971 37796436 0 35 0 515 1 0.0815034
SE_02_20100161 chr17 37641145 37645400 0 15 1 221 1 -0.00297048
SE_02_20100162 chr11 65185660 65194257 0 55 0 399 4 0.0255937
SE_02_20100163 chr14 50506215 50512344 0 19 1 127 2 0.00248375
SE_02_20100164 chr6 7141447 7158221 0 32 0 204 4 0.105872
SE_02_20100165 chr14 69031111 69045526 0 26 0 132 4 0.0561392
SE_02_20100166 chr20 33892423 33906261 0 24 1 311 6 0.0839711
SE_02_20100167 chr19 30152647 30163277 0 35 0 468 3 -0.0158685
SE_02_20100168 chr7 18547814 18555117 0 11 0 60 2 0.109787
SE_02_20100169 chr7 55133355 55144398 0 16 0 174 6 -0.0174804
SE_02_20100170 chr2 27975899 27990855 0 24 0 65 4 0.0710648
SE_02_20100171 chr1 151166881 151171142 0 42 0 74 2 0.0168697
SE_02_20100172 chr12 125399632 125402832 0 19 2 210 1 0.0542999
SE_02_20100173 chr20 56588009 56593854 0 45 0 181 2 0.0190821
SE_02_20100174 chr1 70818076 70824491 0 25 0 103 2 0.0600696
SE_02_20100175 chr20 4090365 4101398 0 19 1 283 3 0.0450005
SE_02_20100176 chr9 100554404 100565384 0 20 0 167 3 0.0816962
SE_02_20100177 chr15 68308722 68319064 0 23 0 169 3 0.0191441
SE_02_20100178 chr17 57859939 57866118 0 67 1 306 4 0.0817513
SE_02_20100179 chr11 72959157 72970687 0 39 0 234 3 0.027623
SE_02_20100180 chr3 45164204 45185949 0 13 0 177 3 0.0489946
SE_02_20100181 chr3 111569298 111584177 0 36 0 342 3 0.0718594
SE_02_20100182 chr3 102016477 102020074 0 9 0 150 1 0.0726628
SE_02_20100183 chr14 51862318 51865683 0 15 0 65 1 0.0761272
SE_02_20100184 chr6 30715563 30721335 0 12 0 58 4 0.0830568
SE_02_20100185 chr1 23323375 23337941 0 21 0 137 4 0.0279574
SE_02_20100186 chr12 96189147 96201383 0 17 0 48 3 0.0365204
SE_02_20100187 chr9 33156901 33165499 0 15 0 115 4 0.111386
SE_02_20100188 chr3 197438380 197457709 0 26 0 100 3 NA
SE_02_20100189 chr1 43937366 43944370 0 40 0 288 5 0.0406525
SE_02_20100190 chr19 15180407 15186175 0 32 0 192 3 -0.00310167
SE_02_20100191 chr3 156534938 156546272 0 10 0 124 2 0.0765203
SE_02_20100192 chr18 11855539 11862193 0 37 0 354 4 -0.0286308
SE_02_20100193 chr11 86429326 86437534 0 14 0 114 3 0.0457257
SE_02_20100194 chr11 1145488 1148789 0 29 0 269 1 -0.066675
SE_02_20100195 chr17 60867145 60878983 0 31 0 255 3 0.067749
SE_02_20100196 chr11 5382488 5387492 0 19 0 80 3 -0.0116529
SE_02_20100197 chr9 130307691 130321094 0 21 0 271 3 0.00873839
SE_02_20100198 chr2 238397230 238411951 0 24 1 120 3 -0.0299889
SE_02_20100199 chr20 4141151 4152638 0 41 0 200 4 0.0674415
SE_02_20100200 chr2 238367827 238375291 0 14 0 181 2 0.0114761
SE_02_20100201 chr11 100605282 100610876 0 19 0 183 3 0.0614658
SE_02_20100202 chr1 159880551 159893612 0 18 0 259 2 0.0991798
SE_02_20100203 chr21 36254308 36267220 0 28 1 400 4 0.123896
SE_02_20100204 chr5 57120392 57135054 0 20 0 67 4 0.0467023
SE_02_20100205 chr8 99846528 99859220 0 28 0 428 4 0.0404486
SE_02_20100206 chr1 43406184 43417814 0 17 0 368 3 0.0782044
SE_02_20100207 chr7 26896691 26909495 0 17 0 244 2 0.110127

Master TFs Network

CRC model in Sample_02_201