General Details

Sample Id:Sample_02_195
Genome:Homo sapiens-hg19
Series: GSE75898
Biosample Type:Cell line
Tissue Type:Stomach
Sample Name:OCUM1
PMID: 27677335|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_19500001 chr15 60653194 60717283 0 156 2 988 8 0.0190859
SE_02_19500002 chr13 95738070 95781610 0 91 1 393 5 0.0381018
SE_02_19500003 chr1 235090597 235115669 0 111 1 648 3 0.0589239
SE_02_19500004 chr1 201976349 202028590 0 115 2 933 6 0.0150115
SE_02_19500005 chr18 3595839 3627161 0 99 1 527 5 0.0123224
SE_02_19500006 chr14 50437482 50471842 0 74 1 468 4 0.0544537
SE_02_19500007 chr15 58723072 58763271 0 97 1 922 5 -0.0114507
SE_02_19500008 chr8 62642937 62681595 0 120 4 1157 7 0.0135664
SE_02_19500009 chr14 54568555 54585186 0 55 1 348 3 0.102473
SE_02_19500010 chr11 118781107 118801682 0 87 2 599 4 0.173153
SE_02_19500011 chr7 73222866 73247999 0 64 1 434 4 0.00747317
SE_02_19500012 chr17 73675264 73705135 0 58 2 606 4 0.0394409
SE_02_19500013 chr14 65692474 65724271 0 80 0 401 4 0.0266444
SE_02_19500014 chr12 52537019 52551248 0 61 1 423 3 0.0181918
SE_02_19500015 chr1 16469794 16510607 0 96 2 1084 8 0.0546489
SE_02_19500016 chr14 32402787 32421374 0 78 2 411 4 0.118165
SE_02_19500017 chr12 53295948 53322336 0 69 0 564 4 0.0257134
SE_02_19500018 chr13 73897415 73912620 0 43 0 213 2 0.089673
SE_02_19500019 chr22 30639823 30655062 0 88 1 931 3 0.0737912
SE_02_19500020 chrX 46175395 46195216 0 88 2 754 5 0.0803526
SE_02_19500021 chr15 93343113 93364841 0 92 3 459 3 0.000530139
SE_02_19500022 chr2 173292925 173330743 0 90 3 471 5 0.0577933
SE_02_19500023 chr1 207180041 207207095 0 62 1 621 3 0.0709459
SE_02_19500024 chr17 57904921 57926673 0 71 2 455 3 0.0780193
SE_02_19500025 chr15 89631313 89673099 0 88 1 516 6 0.0916937
SE_02_19500026 chr15 59563870 59577537 0 37 0 237 2 0.00503667
SE_02_19500027 chr3 149083004 149120257 0 96 0 797 6 0.0556369
SE_02_19500028 chr14 54416596 54430735 0 61 2 393 3 0.142273
SE_02_19500029 chr1 156073077 156100706 0 104 2 1002 5 0.0930578
SE_02_19500030 chr17 16912428 16933312 0 65 3 768 5 -0.0503171
SE_02_19500031 chr15 80876127 80891130 0 44 0 454 2 0.00272304
SE_02_19500032 chr7 130585265 130608526 0 94 3 498 4 0.0578155
SE_02_19500033 chr2 232528870 232545610 0 70 2 437 3 -0.0255694
SE_02_19500034 chr13 73736432 73748715 0 40 0 348 2 0.0567183
SE_02_19500035 chr14 54634012 54646754 0 49 1 500 2 0.113438
SE_02_19500036 chr7 134048565 134060453 0 51 0 334 4 0.039049
SE_02_19500037 chr1 234949726 234961993 0 66 1 381 2 0.00509586
SE_02_19500038 chr11 65239003 65269066 0 93 2 524 5 0.000639837
SE_02_19500039 chr19 13951714 13966969 0 96 3 628 6 0.0336806
SE_02_19500040 chr6 31701811 31707725 0 34 1 297 1 0.123997
SE_02_19500041 chr1 234734270 234750597 0 44 1 195 3 0.218349
SE_02_19500042 chr12 6381496 6405560 0 52 1 637 4 -0.0229141
SE_02_19500043 chr8 145011115 145027151 0 72 1 539 4 0.0160151
SE_02_19500044 chr6 159269588 159291901 0 40 1 205 4 0.0265123
SE_02_19500045 chr11 129184721 129195314 0 40 0 138 2 0.0453205
SE_02_19500046 chr13 73633887 73666050 0 67 2 706 4 0.101781
SE_02_19500047 chr1 153536863 153542517 0 26 1 179 1 0.0284973
SE_02_19500048 chr14 102175742 102200264 0 40 0 328 3 -0.0236067
SE_02_19500049 chr15 74687147 74691367 0 18 0 106 1 0.00652754
SE_02_19500050 chr21 40996163 41011340 0 80 1 793 3 -0.000901091
SE_02_19500051 chr8 126657347 126678357 0 39 0 265 3 0.00152301
SE_02_19500052 chr18 3653130 3672489 0 63 1 345 3 0.0528711
SE_02_19500053 chr10 122737454 122764091 0 69 0 675 4 0.0533353
SE_02_19500054 chr20 30291145 30311465 0 68 0 588 3 0.14293
SE_02_19500055 chr17 39807177 39823397 0 64 1 624 2 0.0133958
SE_02_19500056 chr2 206609613 206636206 0 55 1 346 3 0.09288
SE_02_19500057 chr14 75718201 75727246 0 47 1 504 2 0.127499
SE_02_19500058 chr13 43617743 43638187 0 70 1 428 2 0.0278086
SE_02_19500059 chr8 29578590 29597769 0 55 0 370 3 0.0313302
SE_02_19500060 chr12 125398055 125413550 0 60 2 669 2 -0.00290944
SE_02_19500061 chr3 185254294 185277346 0 94 3 542 3 0.0164988
SE_02_19500062 chr17 62782632 62805927 0 66 1 449 3 0.00698803
SE_02_19500063 chr12 12027931 12039975 0 54 2 442 4 0.068676
SE_02_19500064 chr13 106747135 106758228 0 36 0 160 2 0.00514545
SE_02_19500065 chr19 42235881 42261411 0 53 1 192 4 0.00529498
SE_02_19500066 chr1 152007182 152022037 0 45 1 590 2 0.0387865
SE_02_19500067 chr12 6307270 6340593 0 64 2 367 5 -0.00548626
SE_02_19500068 chr2 201979947 201995066 0 69 1 565 2 0.0372883
SE_02_19500069 chr10 114142047 114166212 0 63 1 651 4 0.0319865
SE_02_19500070 chr2 106001326 106029879 0 49 1 407 4 -0.00901535
SE_02_19500071 chr1 229356143 229390657 0 59 0 368 5 0.0091134
SE_02_19500072 chr18 68038488 68053371 0 62 3 542 4 0.0199646
SE_02_19500073 chr14 23024272 23032303 0 37 1 242 1 0.0728982
SE_02_19500074 chr20 34669063 34683964 0 49 0 313 4 0.0757249
SE_02_19500075 chr20 30180350 30200799 0 95 0 890 4 0.0394581
SE_02_19500076 chr19 39171693 39177914 0 52 1 709 1 0.0478845
SE_02_19500077 chr7 134103540 134118346 0 51 1 542 2 -0.0112061
SE_02_19500078 chr6 28906871 28930838 0 46 1 317 4 NA
SE_02_19500079 chr8 39911946 39920865 0 51 2 203 2 -0.000263453
SE_02_19500080 chr14 105435908 105442049 0 42 2 579 1 -0.0118954
SE_02_19500081 chr19 39888355 39902793 0 73 1 707 4 0.0714692
SE_02_19500082 chr7 73155259 73159125 0 42 1 66 1 0.0153519
SE_02_19500083 chr7 155743269 155757072 0 40 0 366 2 -0.0898342
SE_02_19500084 chr14 20868152 20897242 0 55 1 400 3 0.0543662
SE_02_19500085 chr3 42168323 42178181 0 57 2 250 3 -2.28E-05
SE_02_19500086 chr17 43523949 43547325 0 40 0 520 3 0.0618732
SE_02_19500087 chr8 8145692 8171140 0 44 1 429 3 0.00424654
SE_02_19500088 chr14 56268120 56275575 0 38 1 773 1 0.0424194
SE_02_19500089 chr12 71549561 71559991 0 49 1 338 3 0.0923698
SE_02_19500090 chr14 67876484 67914410 0 53 1 452 5 0.0311292
SE_02_19500091 chr17 15545146 15554915 0 54 0 743 3 0.0423452
SE_02_19500092 chr19 13261247 13276899 0 72 1 435 3 0.0153435
SE_02_19500093 chr16 17363572 17372140 0 39 1 324 2 -0.0237754
SE_02_19500094 chr3 156837307 156850568 0 58 0 208 2 0.0567439
SE_02_19500095 chr14 32542679 32555002 0 57 2 401 3 0.0930492
SE_02_19500096 chr8 128226181 128238600 0 59 2 700 1 0.0381657
SE_02_19500097 chr9 69877702 69891635 0 49 2 414 3 0.0144033
SE_02_19500098 chr15 101251890 101265130 0 38 1 244 2 -0.00189249
SE_02_19500099 chr9 66694703 66708639 0 55 2 449 3 -0.0311739
SE_02_19500100 chr12 13528059 13541162 0 25 0 151 2 0.0381615
SE_02_19500101 chr12 13023369 13046100 0 51 1 217 3 0.00291764
SE_02_19500102 chr11 12184431 12190076 0 26 0 322 1 0.0504292
SE_02_19500103 chr18 3448045 3457973 0 41 1 489 1 0.149395
SE_02_19500104 chr14 55588619 55598558 0 72 1 870 3 0.0295048
SE_02_19500105 chr17 48960895 48971588 0 54 0 420 3 0.0171352
SE_02_19500106 chr11 67776937 67784637 0 40 1 401 2 -0.0231872
SE_02_19500107 chr1 156716121 156721658 0 35 1 232 1 0.159337
SE_02_19500108 chr14 105143519 105155900 0 51 1 514 3 -0.0171475
SE_02_19500109 chr3 149189082 149198498 0 69 0 357 2 0.0386885
SE_02_19500110 chr15 75743720 75746835 0 23 1 196 1 0.161939
SE_02_19500111 chr13 24721185 24725298 0 24 0 332 1 -0.0224345
SE_02_19500112 chr12 123370410 123380688 0 49 0 307 2 0.095908
SE_02_19500113 chr7 959581 986741 0 47 1 454 4 -0.0701707
SE_02_19500114 chr10 102129385 102135278 0 29 1 170 1 0.0623303
SE_02_19500115 chr11 65184091 65191700 0 76 2 648 1 0.0147434
SE_02_19500116 chr11 67112371 67124705 0 47 1 347 2 0.0793085
SE_02_19500117 chr12 47473818 47492260 0 66 1 649 4 0.0916669
SE_02_19500118 chr20 45982885 45990514 0 38 1 284 1 0.207902
SE_02_19500119 chr6 137279677 137292278 0 52 1 227 3 0.0315452
SE_02_19500120 chr12 53763911 53767938 0 29 1 280 1 0.032714
SE_02_19500121 chr9 74741550 74766875 0 69 2 452 4 0.049586
SE_02_19500122 chr12 76337316 76356127 0 39 0 292 3 NA
SE_02_19500123 chr2 161063276 161085291 0 47 1 440 3 0.0494236
SE_02_19500124 chr10 3846241 3854311 0 44 1 502 1 -0.0234076
SE_02_19500125 chr15 90701117 90707058 0 31 0 122 1 -0.0154827
SE_02_19500126 chr1 160507317 160512366 0 26 0 119 1 0.0509508
SE_02_19500127 chr14 93505891 93517814 0 82 1 645 3 0.0183278
SE_02_19500128 chr15 75490868 75497398 0 49 1 400 2 0.0519456
SE_02_19500129 chr2 220548614 220565870 0 61 1 596 2 0.0626185
SE_02_19500130 chr1 230881924 230889892 0 46 2 348 1 -0.0293581
SE_02_19500131 chr10 124050214 124069353 0 40 0 348 2 0.0282587
SE_02_19500132 chr9 132245290 132259670 0 60 2 509 4 0.0280498
SE_02_19500133 chr14 105947128 105956419 0 43 1 536 2 -0.0303975
SE_02_19500134 chr22 30601597 30609536 0 42 3 286 1 0.0399942
SE_02_19500135 chr7 20254225 20261510 0 57 1 310 1 0.084862
SE_02_19500136 chr15 90733108 90758664 0 35 1 430 3 0.0209742
SE_02_19500137 chr14 32474926 32481515 0 30 1 72 2 0.136064
SE_02_19500138 chr1 235131923 235134591 0 14 0 62 1 0.0320457
SE_02_19500139 chr7 24859813 24867093 0 23 0 215 2 0.0360996
SE_02_19500140 chr16 19006388 19019105 0 44 0 306 2 NA
SE_02_19500141 chr15 75247417 75252424 0 43 2 247 1 0.114855
SE_02_19500142 chr15 75957480 75963083 0 23 1 94 1 0.0246261
SE_02_19500143 chr15 81131170 81149438 0 57 1 294 4 0.00504643
SE_02_19500144 chr1 154942173 154948806 0 63 0 521 1 0.125188
SE_02_19500145 chr14 54714504 54722289 0 36 0 207 1 0.0677419
SE_02_19500146 chr14 65818560 65825258 0 35 0 248 1 0.0531141
SE_02_19500147 chr13 80350301 80359129 0 34 0 304 2 0.122177
SE_02_19500148 chr16 298613 306217 0 30 3 110 3 -0.0306921
SE_02_19500149 chr19 12888583 12904525 0 70 1 445 3 0.125166
SE_02_19500150 chr8 126696302 126712024 0 52 1 369 2 0.0129432
SE_02_19500151 chr11 9586553 9594963 0 52 1 390 3 0.0805745
SE_02_19500152 chr8 128598109 128609884 0 40 0 468 2 -0.00190346
SE_02_19500153 chr12 47663379 47672907 0 83 0 398 2 0.0557047
SE_02_19500154 chrX 107275714 107281849 0 22 0 157 1 0.0528651
SE_02_19500155 chr17 55482444 55493292 0 35 0 264 2 0.110625
SE_02_19500156 chr7 158609361 158615610 0 42 0 363 1 0.00296656
SE_02_19500157 chr18 33056699 33062974 0 36 0 188 1 0.0592995
SE_02_19500158 chr13 73938521 73944447 0 38 1 349 1 0.158471
SE_02_19500159 chr1 207995503 208002152 0 45 1 353 2 0.221763
SE_02_19500160 chr16 68774680 68791631 0 27 1 164 2 0.0171399
SE_02_19500161 chr7 36323181 36332182 0 50 0 479 1 0.00494494
SE_02_19500162 chr20 10544011 10560642 0 37 0 182 2 0.0640443
SE_02_19500163 chr8 102154897 102172484 0 33 1 223 3 0.0620221
SE_02_19500164 chr10 81956135 81968720 0 33 1 255 3 0.0428587

Master TFs Network

CRC model in Sample_02_195