General Details

Sample Id:Sample_02_192
Genome:Homo sapiens-hg19
Series: GSE75595
Biosample Type:Cell line
Tissue Type:Stomach
Sample Name:MKN45
PMID: 27016420|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_19200001 chr17 57904637 57936964 0 109 2 825 8 0.0621953
SE_02_19200002 chr19 13950026 13977090 0 98 1 514 6 0.0329454
SE_02_19200003 chr1 201977618 202027408 0 87 2 560 7 0.0145008
SE_02_19200004 chr11 65238915 65268589 0 78 2 469 8 -0.002456
SE_02_19200005 chr2 232467910 232487624 0 114 1 494 4 0.0271175
SE_02_19200006 chr7 115849693 115852855 0 16 0 42 1 0.0637161
SE_02_19200007 chr8 145011970 145027033 0 43 0 256 2 0.00763821
SE_02_19200008 chr12 52537552 52547238 0 28 0 182 3 0.015304
SE_02_19200009 chr17 48961069 48998140 0 72 1 185 4 0.028104
SE_02_19200010 chr1 1060262 1100539 0 57 1 472 8 -0.0906899
SE_02_19200011 chr7 116411020 116419306 0 90 3 275 1 0.166301
SE_02_19200012 chr11 27415484 27424983 0 64 2 290 2 0.0467879
SE_02_19200013 chr15 93345108 93376623 0 102 3 664 7 0.01736
SE_02_19200014 chr7 116310522 116315296 0 26 0 101 1 0.17707
SE_02_19200015 chr12 53317392 53322169 0 37 1 359 2 0.0398315
SE_02_19200016 chr2 232526399 232546634 0 54 2 399 4 -0.0313833
SE_02_19200017 chr11 67112218 67125032 0 51 1 409 3 0.0784021
SE_02_19200018 chr18 3595839 3626307 0 84 1 479 4 0.0137854
SE_02_19200019 chr19 13262786 13279341 0 64 1 482 4 0.0163689
SE_02_19200020 chr17 7737570 7748313 0 46 0 356 2 0.150889
SE_02_19200021 chr12 13024419 13046378 0 46 1 162 4 0.00256767
SE_02_19200022 chr12 31883783 31903512 0 74 3 525 5 0.0287249
SE_02_19200023 chr12 13250322 13256394 0 53 0 375 3 0.107868
SE_02_19200024 chr2 239193524 239200054 0 30 1 362 2 0.0210115
SE_02_19200025 chr7 5457456 5469485 0 59 1 343 4 0.129945
SE_02_19200026 chr12 53296358 53302945 0 33 0 239 2 0.0399582
SE_02_19200027 chr9 132243946 132259158 0 54 0 375 4 0.0281588
SE_02_19200028 chr11 27488776 27494410 0 40 1 588 1 0.125095
SE_02_19200029 chr19 12888361 12905111 0 82 0 682 5 0.123718
SE_02_19200030 chr19 18475015 18499563 0 70 1 724 6 -0.00261905
SE_02_19200031 chr7 16842432 16861747 0 114 1 668 5 0.0538546
SE_02_19200032 chr1 202070612 202082972 0 40 1 230 3 0.0248313
SE_02_19200033 chr19 42236470 42255295 0 45 1 339 5 0.00399955
SE_02_19200034 chr11 65184904 65193219 0 80 0 605 1 0.0233832
SE_02_19200035 chr17 16913134 16932730 0 33 2 397 4 -0.0522891
SE_02_19200036 chr12 71549209 71559216 0 67 1 311 4 0.100582
SE_02_19200037 chr19 39888565 39901900 0 50 0 343 3 0.0719574
SE_02_19200038 chr19 42277278 42293719 0 57 1 366 6 -0.00528842
SE_02_19200039 chr6 30715247 30733084 0 40 1 304 4 0.0385389
SE_02_19200040 chr14 75719024 75727268 0 46 1 373 5 0.139648
SE_02_19200041 chr2 219151609 219163794 0 62 1 548 3 0.0532417
SE_02_19200042 chr17 36101691 36105916 0 41 0 246 1 0.140417
SE_02_19200043 chr12 123371343 123380913 0 52 1 263 3 0.103417
SE_02_19200044 chr17 39806867 39813115 0 40 0 428 2 0.0187086
SE_02_19200045 chr6 31702062 31707591 0 31 1 222 1 0.119246
SE_02_19200046 chr11 89711619 89714096 0 23 0 82 1 -0.0658339
SE_02_19200047 chr11 89596749 89599052 0 12 0 77 1 -0.0793143
SE_02_19200048 chr6 32935651 32939650 0 27 0 138 1 0.10366
SE_02_19200049 chr1 16493464 16511847 0 46 1 408 6 0.0179591
SE_02_19200050 chr6 52191979 52199395 0 29 2 148 2 0.0455565
SE_02_19200051 chr21 45187338 45202769 0 51 1 281 3 -0.0545949
SE_02_19200052 chr14 56270095 56300089 0 48 0 581 6 0.034439
SE_02_19200053 chr17 75281026 75284995 0 15 0 188 1 0.0261708
SE_02_19200054 chr11 118781891 118801019 0 36 0 231 4 0.168007
SE_02_19200055 chr19 45946860 45982446 0 38 0 254 6 0.060251
SE_02_19200056 chr14 75742996 75747295 0 37 0 190 1 0.174376
SE_02_19200057 chr3 177062593 177077839 0 22 1 133 3 0.0564701
SE_02_19200058 chr17 73679965 73704158 0 45 1 220 6 0.0455083
SE_02_19200059 chr15 89654508 89673133 0 76 1 398 5 0.0866166
SE_02_19200060 chr18 32987389 32991258 0 19 0 82 1 0.0334688
SE_02_19200061 chr20 50354838 50369644 0 51 1 280 5 -0.0152575
SE_02_19200062 chr11 76954616 76962165 0 42 1 167 2 0.0726869
SE_02_19200063 chr1 150533341 150535768 0 22 0 234 1 0.0906131
SE_02_19200064 chr17 70586759 70612270 0 31 0 145 4 0.00926293
SE_02_19200065 chrX 41191737 41194793 0 23 0 138 1 0.0419682
SE_02_19200066 chr8 101962069 101966288 0 28 0 194 1 0.115666
SE_02_19200067 chr10 74435487 74448020 0 42 1 255 6 0.0579227
SE_02_19200068 chrX 23815165 23825713 0 45 1 306 2 -0.00867084
SE_02_19200069 chr7 116448450 116453090 0 50 2 345 1 0.0993771
SE_02_19200070 chr2 157188677 157199125 0 38 1 211 2 0.241417
SE_02_19200071 chr10 81955680 81968058 0 34 2 364 2 0.047738
SE_02_19200072 chr1 151963677 151968318 0 44 1 233 1 0.0854529
SE_02_19200073 chr12 53264309 53269132 0 31 0 138 1 0.0737943
SE_02_19200074 chr3 5018141 5028699 0 33 0 222 2 0.20599
SE_02_19200075 chr19 11201240 11207050 0 39 1 230 2 -0.0736937
SE_02_19200076 chr7 29602167 29606534 0 27 1 112 2 0.10438
SE_02_19200077 chr6 2982327 2990869 0 44 1 328 3 -0.0381162
SE_02_19200078 chr17 17727141 17744670 0 41 0 404 3 0.0308935
SE_02_19200079 chr19 17905528 17909383 0 23 0 56 2 -0.0147117
SE_02_19200080 chr6 6712886 6726342 0 20 1 158 4 0.00690366
SE_02_19200081 chr7 120952543 120955334 0 24 0 177 1 0.157982
SE_02_19200082 chr14 90977685 90981228 0 18 1 68 2 -0.00908005
SE_02_19200083 chr17 2296107 2310414 0 74 1 448 3 0.0933379
SE_02_19200084 chr1 152006708 152021808 0 44 1 609 2 0.0377761
SE_02_19200085 chr3 193851331 193860280 0 42 1 411 4 0.230827
SE_02_19200086 chr1 156092184 156100772 0 53 1 327 3 0.120385
SE_02_19200087 chr18 68042959 68051623 0 50 2 385 4 0.0118254
SE_02_19200088 chr7 73241077 73247050 0 34 0 174 2 0.0607425
SE_02_19200089 chr11 77009206 77013043 0 35 1 158 1 0.0439425
SE_02_19200090 chr14 105433687 105441092 0 18 1 78 3 -0.0238405
SE_02_19200091 chr11 96039224 96049095 0 20 0 118 3 0.0855477
SE_02_19200092 chr17 36068172 36074191 0 42 1 214 2 0.188573
SE_02_19200093 chr19 1249790 1262640 0 35 0 264 4 0.0749949
SE_02_19200094 chr15 80878123 80893065 0 45 1 429 4 0.0141569
SE_02_19200095 chr7 98805187 98810693 0 29 1 241 3 -0.0594041
SE_02_19200096 chr10 22534187 22542924 0 37 0 348 3 0.0523228
SE_02_19200097 chr2 232570709 232575856 0 28 1 188 2 0.0618071
SE_02_19200098 chr1 156072598 156077063 0 30 1 369 3 0.0709726
SE_02_19200099 chr6 6749371 6760538 0 49 1 407 5 0.0229874
SE_02_19200100 chr1 202052957 202056408 0 19 1 97 1 0.082968
SE_02_19200101 chr5 34584440 34587877 0 35 1 246 2 0.0699335
SE_02_19200102 chr12 6382471 6390136 0 37 1 489 3 -0.0292564
SE_02_19200103 chr17 49021086 49028140 0 12 0 168 3 0.0470684
SE_02_19200104 chr13 97907252 97912082 0 41 3 305 2 0.083638
SE_02_19200105 chr7 114561867 114564425 0 24 1 84 1 0.142187
SE_02_19200106 chr17 55976878 55990348 0 42 1 445 3 0.0611772
SE_02_19200107 chr15 60685688 60691272 0 48 1 192 1 0.0236573
SE_02_19200108 chr18 33057311 33062116 0 40 1 206 1 0.0723121
SE_02_19200109 chr8 128305213 128311441 0 43 1 284 3 0.0421078
SE_02_19200110 chr2 54784697 54801273 0 26 0 218 2 0.0974248
SE_02_19200111 chr17 48942263 48946129 0 30 1 163 2 0.146664
SE_02_19200112 chr13 109916298 109919539 0 17 0 98 2 NA
SE_02_19200113 chr6 11207716 11230336 0 25 1 302 3 0.0959237
SE_02_19200114 chr18 33035376 33040797 0 42 1 310 1 0.0397771
SE_02_19200115 chr1 153539183 153541689 0 8 0 10 1 0.0478839
SE_02_19200116 chr19 39173093 39176778 0 28 0 475 2 0.0511564
SE_02_19200117 chr8 127568040 127584818 0 18 1 175 2 0.0445646
SE_02_19200118 chr17 16764515 16769515 0 19 2 237 2 -0.0421566
SE_02_19200119 chr13 106748377 106754206 0 22 0 62 2 0.0284562
SE_02_19200120 chr15 59565978 59577491 0 29 0 235 3 -0.000204345
SE_02_19200121 chr3 38028755 38034930 0 13 0 126 2 -0.000835224
SE_02_19200122 chr7 97981132 97990588 0 36 0 175 5 0.0179539
SE_02_19200123 chr15 80986786 80990660 0 33 1 441 1 0.0401837
SE_02_19200124 chr12 7070420 7073695 0 21 1 131 1 0.0838922
SE_02_19200125 chr17 72375839 72383908 0 26 0 338 2 0.0181807
SE_02_19200126 chr1 33224471 33227814 0 27 0 133 1 0.136408
SE_02_19200127 chr7 51382253 51385247 0 22 0 160 1 0.0131445
SE_02_19200128 chr1 22298129 22301738 0 29 1 271 2 -0.0779571
SE_02_19200129 chr7 104652179 104656060 0 38 1 330 1 0.216011

Master TFs Network

CRC model in Sample_02_192