General Details

Sample Id:Sample_02_191
Genome:Homo sapiens-hg19
Series: GSE75595
Biosample Type:Cell line
Tissue Type:Stomach
Sample Name:SNU719
PMID: 27016420|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_19100001 chr20 30283157 30311421 0 116 3 763 13 0.126723
SE_02_19100002 chr7 155742972 155757657 0 43 0 344 3 -0.0880089
SE_02_19100003 chr19 39888535 39902246 0 65 2 415 4 0.0730076
SE_02_19100004 chr17 57904934 57931728 0 61 1 382 9 0.0650372
SE_02_19100005 chr10 114134758 114165454 0 82 2 890 14 0.0306997
SE_02_19100006 chr7 5457682 5470293 0 58 2 441 4 0.12065
SE_02_19100007 chr14 54569183 54583874 0 75 1 411 6 0.101116
SE_02_19100008 chr1 16470089 16508484 0 61 1 587 13 0.0560998
SE_02_19100009 chr18 3593086 3625436 0 97 1 776 6 0.0237865
SE_02_19100010 chr7 73236591 73248159 0 40 2 197 4 0.0341
SE_02_19100011 chr17 70401084 70426761 0 69 1 563 9 0.0425832
SE_02_19100012 chr11 118781337 118801067 0 63 1 374 14 0.171196
SE_02_19100013 chr17 62788183 62807439 0 40 0 620 4 0.0169897
SE_02_19100014 chr12 53299757 53322257 0 47 2 519 5 0.0226428
SE_02_19100015 chr17 43518695 43542035 0 34 0 568 5 0.0602868
SE_02_19100016 chr14 93508196 93523135 0 71 1 407 8 0.0120797
SE_02_19100017 chr12 52537753 52545208 0 19 1 110 5 0.0100964
SE_02_19100018 chr7 36318901 36332562 0 69 2 484 7 0.0126853
SE_02_19100019 chr19 39172930 39177198 0 35 1 616 1 0.0583568
SE_02_19100020 chr14 102187521 102200263 0 40 1 243 2 -0.00506261
SE_02_19100021 chr13 44874186 44888614 0 68 0 522 5 0.0512595
SE_02_19100022 chr19 13949341 13973182 0 50 2 249 8 0.0310876
SE_02_19100023 chr12 125398660 125424428 0 64 0 705 6 -0.00517838
SE_02_19100024 chr17 15545666 15554990 0 66 1 795 5 0.0442886
SE_02_19100025 chr2 70309840 70336171 0 44 2 427 5 0.0553282
SE_02_19100026 chr14 35015220 35026164 0 9 0 27 2 -0.0521208
SE_02_19100027 chr11 65185136 65194807 0 63 2 408 3 0.0288484
SE_02_19100028 chr17 73675386 73704113 0 53 2 511 7 0.0430402
SE_02_19100029 chr19 16180605 16200520 0 35 1 194 5 -0.00427991
SE_02_19100030 chr14 69245564 69263018 0 55 2 461 7 0.136785
SE_02_19100031 chr19 45227326 45269198 0 49 1 372 11 0.0170455
SE_02_19100032 chr19 33523455 33543979 0 55 0 196 7 -0.0062563
SE_02_19100033 chr2 232476185 232487420 0 42 1 210 5 0.0190928
SE_02_19100034 chr7 959517 966904 0 20 1 125 2 -0.0943712
SE_02_19100035 chr19 47597773 47615803 0 39 1 160 6 0.0649362
SE_02_19100036 chr3 193839380 193860197 0 45 1 263 8 0.144248
SE_02_19100037 chr14 105143691 105155850 0 29 1 159 4 -0.0162544
SE_02_19100038 chr1 234734706 234750348 0 48 2 266 9 0.225546
SE_02_19100039 chr17 75281076 75285152 0 14 0 177 2 0.0290246
SE_02_19100040 chr12 89741059 89749194 0 39 1 140 3 0.237942
SE_02_19100041 chr19 11201129 11207029 0 41 3 282 2 -0.0714574
SE_02_19100042 chr17 16913110 16932892 0 27 0 347 5 -0.0518071
SE_02_19100043 chr16 1131029 1141172 0 20 1 207 3 -0.0729633
SE_02_19100044 chr7 77038110 77055998 0 76 1 413 6 0.077597
SE_02_19100045 chr6 1310019 1336682 0 65 2 401 8 0.0354031
SE_02_19100046 chr9 132244195 132259131 0 50 1 326 9 0.029641
SE_02_19100047 chr8 128218045 128238171 0 59 0 380 8 0.0378075
SE_02_19100048 chr17 18620576 18627606 0 42 1 198 3 0.0314961
SE_02_19100049 chr8 8146255 8155354 0 25 0 308 3 -0.0134333
SE_02_19100050 chr9 38031244 38050498 0 44 1 323 6 0.0599982
SE_02_19100051 chr17 77961077 77968361 0 40 2 196 3 -0.0586771
SE_02_19100052 chr15 101251984 101263957 0 37 0 261 5 -0.00180173
SE_02_19100053 chr20 3777110 3794286 0 47 2 182 7 0.0909994
SE_02_19100054 chr2 62795207 62807374 0 55 0 211 4 0.0950277
SE_02_19100055 chr19 12893531 12904880 0 39 1 449 3 0.151788
SE_02_19100056 chr19 13262748 13279438 0 49 2 270 7 0.0156822
SE_02_19100057 chr4 38666611 38676754 0 57 1 510 6 0.150466
SE_02_19100058 chr19 49117127 49138719 0 17 1 55 4 0.0616163
SE_02_19100059 chr10 5587141 5592441 0 25 0 184 5 -0.0775319
SE_02_19100060 chr14 74207701 74224527 0 28 0 97 7 0.0988973
SE_02_19100061 chr14 50466405 50471272 0 31 1 244 1 0.0693075
SE_02_19100062 chr2 85132767 85151864 0 41 2 536 3 0.0374498
SE_02_19100063 chr20 61273933 61284798 0 30 0 217 5 -0.116414
SE_02_19100064 chr1 1060342 1100319 0 43 1 366 10 -0.0907851
SE_02_19100065 chr1 153487851 153509530 0 19 0 169 5 0.0217365
SE_02_19100066 chr2 28601449 28618114 0 20 0 104 5 0.0904644
SE_02_19100067 chr7 76212060 76236010 0 66 1 293 6 0.0219461
SE_02_19100068 chr8 22768839 22775923 0 32 1 322 5 0.011447
SE_02_19100069 chr16 69430136 69443360 0 47 1 263 5 0.0606582
SE_02_19100070 chr19 39138304 39150327 0 50 2 409 5 0.0777159
SE_02_19100071 chr15 60685510 60701540 0 49 0 93 3 0.0227349
SE_02_19100072 chr20 381406 391176 0 45 1 294 3 0.0418471
SE_02_19100073 chr2 85171264 85186559 0 27 1 254 4 0.0166945
SE_02_19100074 chr19 46569718 46580917 0 29 0 247 5 0.0216184
SE_02_19100075 chr2 54760296 54800347 0 37 1 187 7 0.0907606
SE_02_19100076 chr17 7737585 7748225 0 46 1 361 5 0.149192
SE_02_19100077 chr7 73878865 73895689 0 47 2 498 7 -0.00379421
SE_02_19100078 chr1 17222197 17232407 0 17 0 110 4 -0.0782935
SE_02_19100079 chr7 130587069 130603252 0 34 1 317 6 0.0523906
SE_02_19100080 chr15 89633051 89672620 0 50 2 169 12 0.0890068
SE_02_19100081 chr17 2296150 2311344 0 65 2 314 3 0.0867626
SE_02_19100082 chr14 55569124 55575424 0 46 0 335 5 0.0135762
SE_02_19100083 chr17 77889429 77906503 0 24 2 147 6 -0.0618848
SE_02_19100084 chr9 73027120 73036593 0 35 1 226 3 0.217243
SE_02_19100085 chr17 16763830 16769628 0 17 0 280 3 -0.0463834
SE_02_19100086 chr16 70779381 70794784 0 38 1 238 4 0.0119001
SE_02_19100087 chr3 124197082 124211863 0 35 0 83 5 0.0935948
SE_02_19100088 chr8 145013881 145023795 0 23 1 148 3 -0.0153649
SE_02_19100089 chr3 49937223 49944336 0 43 2 276 3 0.1003
SE_02_19100090 chr1 83599788 83617698 0 38 1 230 5 0.0186626
SE_02_19100091 chr20 25210878 25220397 0 24 0 112 7 -0.0167792
SE_02_19100092 chr17 79479986 79487382 0 22 1 152 2 -0.0658878
SE_02_19100093 chr20 45985563 45989907 0 24 2 92 1 0.177396
SE_02_19100094 chr19 44241706 44245449 0 16 0 105 2 0.0704065
SE_02_19100095 chr17 21188167 21191293 0 10 0 175 1 0.10265
SE_02_19100096 chr10 70976414 70993379 0 29 2 277 7 0.0124721
SE_02_19100097 chr14 65766600 65772218 0 21 0 209 5 0.0663547
SE_02_19100098 chr14 50506833 50514770 0 35 0 298 5 0.010574
SE_02_19100099 chr7 24860347 24867495 0 29 0 285 3 0.0393926
SE_02_19100100 chr7 57416580 57439021 0 43 1 666 7 -0.0220454
SE_02_19100101 chr14 105438043 105440936 0 8 0 8 1 -0.0509749
SE_02_19100102 chr20 30148021 30162066 0 33 1 248 5 0.0530085
SE_02_19100103 chr12 76337499 76355214 0 26 1 288 6 0.0449922
SE_02_19100104 chr1 152007289 152021595 0 35 2 361 2 0.0398443
SE_02_19100105 chr1 33811494 33815494 0 27 0 135 1 0.157247
SE_02_19100106 chr14 75719010 75726663 0 33 1 375 4 0.131894
SE_02_19100107 chr11 12184608 12190008 0 34 0 328 3 0.0513119
SE_02_19100108 chr17 70440303 70463403 0 24 0 70 7 0.0330089
SE_02_19100109 chr14 65820612 65824909 0 32 0 235 3 0.0876032
SE_02_19100110 chr22 19584029 19596946 0 27 0 169 6 -0.0486227
SE_02_19100111 chr2 106012542 106021335 0 23 1 115 4 -0.0100483
SE_02_19100112 chr17 16188824 16201596 0 47 0 543 2 0.006527
SE_02_19100113 chr10 3822291 3827477 0 32 0 150 3 0.0925781
SE_02_19100114 chr7 134048623 134055667 0 47 1 304 5 0.0416996
SE_02_19100115 chr14 54633407 54641638 0 13 0 364 4 0.100487
SE_02_19100116 chr17 74254538 74260949 0 32 0 429 3 0.0542164
SE_02_19100117 chr7 55132435 55146064 0 39 0 150 4 -0.0218106
SE_02_19100118 chr19 1746372 1755983 0 18 2 142 3 0.0229563
SE_02_19100119 chr12 6323854 6340187 0 27 1 169 4 -0.00889228
SE_02_19100120 chr4 75578371 75586699 0 33 1 94 4 0.00791666
SE_02_19100121 chr16 86697212 86699451 0 21 0 197 1 -0.0893727
SE_02_19100122 chr8 103816831 103823047 0 32 1 419 4 0.0780426
SE_02_19100123 chr1 205409648 205420723 0 12 0 91 3 0.153299
SE_02_19100124 chr19 49375543 49377837 0 17 0 138 1 0.0497858
SE_02_19100125 chr7 44673458 44680491 0 38 1 86 4 0.0443867
SE_02_19100126 chr15 90746107 90756866 0 20 0 219 4 0.0177105
SE_02_19100127 chr20 14959690 14968366 0 45 1 156 4 0.0400758
SE_02_19100128 chr1 3236078 3241039 0 15 0 98 2 -0.0562545
SE_02_19100129 chr10 3847554 3853791 0 46 0 413 6 -0.0301132
SE_02_19100130 chr13 47175031 47183585 0 53 1 258 3 0.0707842
SE_02_19100131 chr2 232526410 232546458 0 28 1 223 5 -0.0308253
SE_02_19100132 chr16 19009226 19018842 0 29 1 270 6 -0.00340117
SE_02_19100133 chr9 139795083 139797664 0 14 1 164 2 -0.0468329
SE_02_19100134 chr20 48988449 49017406 0 34 2 523 9 -0.00289345
SE_02_19100135 chr19 53426206 53449585 0 32 1 367 4 -0.0826296
SE_02_19100136 chr19 17905857 17909278 0 18 0 36 2 -0.0158981
SE_02_19100137 chr7 76074027 76097570 0 48 0 324 4 0.0176136
SE_02_19100138 chr2 157188720 157199077 0 34 1 246 3 0.24096
SE_02_19100139 chr19 50708697 50719706 0 18 0 75 3 0.043434
SE_02_19100140 chr1 32038616 32042062 0 21 0 82 2 0.0478739
SE_02_19100141 chr2 9373482 9376597 0 16 0 97 2 0.0145114
SE_02_19100142 chr7 984342 992111 0 19 1 255 4 -0.0497884
SE_02_19100143 chr20 49344740 49347591 0 17 0 241 1 0.0915067
SE_02_19100144 chr7 12839830 12845330 0 34 0 271 2 0.0722981
SE_02_19100145 chr17 39804902 39812916 0 30 1 318 4 0.0139854
SE_02_19100146 chr4 75548418 75558877 0 43 0 191 4 0.00312621
SE_02_19100147 chr9 131901653 131903679 0 17 1 92 2 0.104373
SE_02_19100148 chr11 69793771 69796915 0 13 0 55 2 -0.0275282
SE_02_19100149 chr1 33224332 33228038 0 29 2 149 2 0.131597
SE_02_19100150 chr20 52354580 52403723 0 39 1 272 10 0.00797316
SE_02_19100151 chr19 40926689 40939873 0 36 1 204 2 0.0559311
SE_02_19100152 chr5 141735613 141742780 0 30 1 238 3 0.0553459
SE_02_19100153 chr22 42688710 42711888 0 14 1 75 5 0.0311985
SE_02_19100154 chr1 156716363 156721360 0 19 1 173 3 0.164273
SE_02_19100155 chr22 50720334 50745948 0 21 0 255 3 -0.0215158
SE_02_19100156 chr7 104582979 104587276 0 24 1 293 5 0.0614586
SE_02_19100157 chr7 139929060 139942291 0 32 2 136 4 0.0151819
SE_02_19100158 chr7 158373171 158376360 0 19 0 212 2 -0.0226
SE_02_19100159 chr11 62307258 62324788 0 33 0 157 7 0.0861309
SE_02_19100160 chr2 110858068 110873372 0 22 0 189 3 0.0100776
SE_02_19100161 chr7 64458130 64462214 0 18 1 76 3 0.00654051
SE_02_19100162 chr2 219758049 219774301 0 32 1 316 5 0.0869483
SE_02_19100163 chr17 4379909 4397123 0 25 1 117 6 0.0142948
SE_02_19100164 chr7 32696751 32721263 0 37 1 438 6 0.0169881
SE_02_19100165 chr6 135586702 135592981 0 31 1 224 7 0.0886954
SE_02_19100166 chr17 55183875 55187131 0 8 0 17 3 0.0988162
SE_02_19100167 chr13 106748424 106754125 0 33 1 111 6 0.0299016
SE_02_19100168 chr17 39929140 39957661 0 33 1 210 5 0.0511967
SE_02_19100169 chr17 48712010 48717814 0 25 1 190 3 0.00923316
SE_02_19100170 chr17 70605402 70615085 0 35 2 142 4 0.0124768
SE_02_19100171 chr17 48762306 48771257 0 14 0 70 5 0.128252
SE_02_19100172 chr1 59220288 59229823 0 22 0 70 3 0.0519917
SE_02_19100173 chr3 5018589 5028551 0 17 1 156 3 0.212577
SE_02_19100174 chr5 175286996 175295233 0 19 1 170 4 0.0349224
SE_02_19100175 chr5 139637961 139642300 0 39 1 97 2 0.124261
SE_02_19100176 chr13 43618955 43633347 0 72 0 242 6 0.028327
SE_02_19100177 chr1 234949551 234954423 0 31 1 116 2 0.0117041
SE_02_19100178 chr2 20421648 20432548 0 13 2 60 4 0.0360495
SE_02_19100179 chr22 38198118 38203158 0 24 2 226 2 0.202452
SE_02_19100180 chr13 31618705 31621052 0 13 0 211 2 0.0202962
SE_02_19100181 chr19 41672461 41682314 0 33 1 182 5 -0.016567
SE_02_19100182 chr19 47732127 47747591 0 27 2 277 3 0.043699
SE_02_19100183 chr7 1570278 1573655 0 19 1 147 2 -0.0188071
SE_02_19100184 chr7 104611501 104625271 0 24 0 150 4 0.0728254
SE_02_19100185 chr17 73717520 73720133 0 8 0 37 1 0.013861
SE_02_19100186 chr17 48967533 48971495 0 24 0 97 2 0.0227106
SE_02_19100187 chr1 17090356 17095237 0 28 1 110 2 0.0379027
SE_02_19100188 chr3 38027458 38034344 0 11 1 83 3 -0.0061503
SE_02_19100189 chr19 4051147 4065440 0 23 1 157 3 0.0540446
SE_02_19100190 chr2 101384020 101403445 0 33 1 137 6 0.0198575
SE_02_19100191 chr7 130675984 130682757 0 40 0 230 7 0.0389234
SE_02_19100192 chr4 81045066 81057002 0 54 1 375 7 0.0387606
SE_02_19100193 chr10 112155105 112171027 0 23 1 410 6 0.0473917
SE_02_19100194 chr19 18474845 18491200 0 35 0 352 5 -0.0144049
SE_02_19100195 chr7 27716704 27719821 0 27 1 134 3 0.0583799
SE_02_19100196 chr12 53763977 53766536 0 27 1 159 1 0.0411096
SE_02_19100197 chr1 26676943 26685705 0 43 1 389 2 0.0891305
SE_02_19100198 chr2 74210918 74213134 0 16 1 358 2 0.170855
SE_02_19100199 chr9 22237528 22243621 0 44 1 226 5 0.0525945
SE_02_19100200 chr3 172466191 172469414 0 18 0 147 3 0.0590185
SE_02_19100201 chr7 76585914 76595679 0 31 1 292 4 0.0346656
SE_02_19100202 chr14 67906397 67912384 0 40 0 195 4 0.014758
SE_02_19100203 chr7 92254064 92275789 0 50 1 205 4 0.097949
SE_02_19100204 chr4 3293517 3314564 0 15 1 49 8 -0.0533178
SE_02_19100205 chr2 202012928 202023159 0 23 2 229 5 0.0610688
SE_02_19100206 chr17 48127769 48142197 0 14 0 65 5 0.0954466
SE_02_19100207 chr21 40282714 40291643 0 31 1 101 6 0.000667774
SE_02_19100208 chr9 37963348 37967216 0 17 0 205 3 0.0737746
SE_02_19100209 chr21 34751216 34756383 0 24 1 166 5 -0.0383313
SE_02_19100210 chr11 2222846 2233222 0 13 2 216 6 -0.00995036
SE_02_19100211 chr7 26192609 26207026 0 49 1 165 4 0.05586
SE_02_19100212 chr3 177062909 177077518 0 17 0 198 4 0.0551973
SE_02_19100213 chr3 43219729 43223455 0 26 0 98 2 0.0469784
SE_02_19100214 chr17 46024635 46043358 0 18 0 104 5 0.071287
SE_02_19100215 chr19 45194760 45199393 0 29 1 202 3 -0.00319182
SE_02_19100216 chr1 155098916 155103043 0 14 1 227 1 0.184283
SE_02_19100217 chr9 136008448 136013971 0 20 0 94 3 0.0452329
SE_02_19100218 chr7 5588051 5596604 0 15 1 168 3 -0.0125726
SE_02_19100219 chr1 181614819 181618019 0 15 1 161 3 0.0385536
SE_02_19100220 chr7 77108495 77114284 0 42 1 125 3 0.0502768
SE_02_19100221 chr5 55645620 55655840 0 54 0 414 5 0.103149
SE_02_19100222 chr7 36155351 36168963 0 10 0 90 2 0.0345412
SE_02_19100223 chr12 13024295 13026781 0 18 0 55 1 0.0313047
SE_02_19100224 chr19 41108697 41117137 0 21 1 298 6 0.115108
SE_02_19100225 chr12 26391698 26400684 0 19 0 77 5 0.134916
SE_02_19100226 chr14 67877945 67886307 0 19 0 72 2 0.0484666
SE_02_19100227 chr11 10919980 10922692 0 15 1 222 2 0.166697
SE_02_19100228 chr1 39858127 39865122 0 25 0 147 5 0.127898
SE_02_19100229 chr11 61522279 61525292 0 16 0 184 1 0.0907542
SE_02_19100230 chr16 67493105 67497626 0 26 1 170 1 0.157208
SE_02_19100231 chr17 73868603 73874642 0 16 0 279 3 0.137369
SE_02_19100232 chr12 52629069 52642341 0 8 0 37 5 0.0629656
SE_02_19100233 chr9 140505360 140508111 0 28 0 298 1 0.0229685
SE_02_19100234 chr10 126029811 126043545 0 23 0 131 3 -0.0215816
SE_02_19100235 chr19 46219771 46225355 0 22 2 176 3 0.043039
SE_02_19100236 chr7 20258470 20261175 0 32 0 93 2 0.0903782
SE_02_19100237 chr2 160007434 160014282 0 21 0 82 6 0.124911
SE_02_19100238 chr7 158610819 158614929 0 33 1 290 2 0.00316676
SE_02_19100239 chr1 156092387 156100150 0 35 1 202 3 0.109501
SE_02_19100240 chr12 53339393 53345239 0 25 2 216 3 0.0602288
SE_02_19100241 chr1 153580614 153583619 0 17 0 81 2 0.0448106
SE_02_19100242 chr2 61886301 61898618 0 24 0 262 3 0.0729004
SE_02_19100243 chr4 38155685 38164531 0 33 0 151 6 0.0242757
SE_02_19100244 chr12 27483333 27489523 0 29 0 73 3 0.0558612
SE_02_19100245 chr22 23862979 23879779 0 29 1 232 7 -0.048028
SE_02_19100246 chr13 27998791 28001702 0 11 0 165 1 0.0229982
SE_02_19100247 chr10 105648352 105654448 0 41 1 103 3 0.0693315
SE_02_19100248 chr13 25084723 25087605 0 29 0 124 1 -0.0311861
SE_02_19100249 chr20 10520347 10522984 0 51 0 266 1 0.119794
SE_02_19100250 chr6 137345696 137348856 0 17 0 158 2 0.0596377
SE_02_19100251 chr16 68267570 68272198 0 19 1 362 2 0.120041
SE_02_19100252 chr17 76982699 77002940 0 18 0 102 6 -0.0422573
SE_02_19100253 chr2 43385406 43406605 0 25 0 258 7 0.027421
SE_02_19100254 chr20 61406611 61409121 0 3 0 4 2 -0.0625651
SE_02_19100255 chr19 48151064 48163670 0 36 0 64 3 -0.00756868
SE_02_19100256 chr19 47285922 47290840 0 21 0 201 2 0.0218613
SE_02_19100257 chr4 152244068 152252901 0 23 1 147 3 0.0962482

Master TFs Network

CRC model in Sample_02_191