General Details

Sample Id:Sample_02_189
Genome:Homo sapiens-hg19
Series: GSE75595
Biosample Type:Cell line
Tissue Type:Stomach
Sample Name:SNU016
PMID: 27016420|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_18900001 chr11 35017478 35040101 0 110 1 722 4 0.0371456
SE_02_18900002 chr10 123311699 123368931 0 99 2 554 10 0.0672967
SE_02_18900003 chr11 35159905 35215068 0 115 1 1256 12 0.049582
SE_02_18900004 chr10 122994904 123006529 0 64 1 429 1 0.0458728
SE_02_18900005 chr11 34925283 34953389 0 54 0 240 3 0.0347049
SE_02_18900006 chr10 122913142 122923080 0 59 1 410 2 0.0780883
SE_02_18900007 chr8 128745955 128755724 0 57 0 325 3 0.148407
SE_02_18900008 chr8 128794021 128823415 0 47 1 677 5 -0.0136402
SE_02_18900009 chr8 127568075 127584772 0 23 1 155 2 0.0441791
SE_02_18900010 chr8 128576798 128609506 0 56 1 458 7 -0.00914942
SE_02_18900011 chr10 122828010 122865540 0 59 0 350 6 0.0534409
SE_02_18900012 chr8 128961872 128984679 0 38 1 199 5 -0.0351147
SE_02_18900013 chr8 128843456 128867196 0 35 1 341 8 -0.0397787
SE_02_18900014 chr11 36393593 36407746 0 34 0 261 2 0.0613202
SE_02_18900015 chr8 128504716 128523074 0 49 0 468 2 0.00884307
SE_02_18900016 chr15 45104519 45123131 0 32 0 459 16 0.0153604
SE_02_18900017 chr7 73237241 73248192 0 40 0 270 9 0.0300097
SE_02_18900018 chr10 123019285 123023727 0 30 0 182 2 0.090842
SE_02_18900019 chr15 45362155 45373131 0 26 0 227 12 0.0453336
SE_02_18900020 chr1 17885813 17924572 0 31 0 425 13 0.0134135
SE_02_18900021 chr16 67474755 67497104 0 19 1 147 8 0.136157
SE_02_18900022 chr8 128662956 128683959 0 48 1 215 2 0.0151376
SE_02_18900023 chr20 344079 363436 0 28 1 311 11 0.00602862
SE_02_18900024 chr8 129035829 129048920 0 38 1 271 2 0.00568356
SE_02_18900025 chr11 35061522 35066595 0 20 0 154 1 0.0755078
SE_02_18900026 chr11 34996532 35001071 0 24 0 174 1 0.0094589
SE_02_18900027 chr1 234735550 234754839 0 19 0 109 9 0.205127
SE_02_18900028 chr19 39888657 39901443 0 29 0 246 8 0.0728986
SE_02_18900029 chr12 54368812 54389067 0 24 0 384 9 0.229082
SE_02_18900030 chr1 201976445 201987658 0 22 0 108 10 0.0359975
SE_02_18900031 chr11 35295756 35299185 0 12 0 68 1 0.0785701
SE_02_18900032 chr10 74052281 74092599 0 25 1 114 11 0.0245194
SE_02_18900033 chr7 139929554 139944008 0 27 0 103 8 0.0162096
SE_02_18900034 chr10 123282624 123286771 0 26 1 277 2 0.183814
SE_02_18900035 chr12 52537719 52543567 0 19 0 132 6 -0.0127295
SE_02_18900036 chr10 123083337 123085680 0 21 0 198 1 -0.0165543
SE_02_18900037 chr7 92832190 92852939 0 5 0 8 7 0.0654052
SE_02_18900038 chr11 35256661 35260166 0 14 0 70 1 0.097784
SE_02_18900039 chr17 74634951 74655028 0 11 1 32 6 -0.0038118
SE_02_18900040 chr14 21149550 21154832 0 17 0 172 3 -0.0522324
SE_02_18900041 chr14 104338422 104363360 0 21 1 130 9 -0.0427105
SE_02_18900042 chr9 132244474 132258853 0 15 0 184 8 0.0296958
SE_02_18900043 chr7 105698744 105712683 0 16 0 161 7 0.0521388
SE_02_18900044 chr20 34673429 34686297 0 18 0 234 9 0.0851203
SE_02_18900045 chr7 5460853 5469484 0 23 0 154 8 0.161537
SE_02_18900046 chr11 65244477 65268185 0 11 0 41 7 -0.0025821
SE_02_18900047 chr13 28526858 28540200 0 11 0 50 9 0.078174

Master TFs Network

CRC model in Sample_02_189