General Details

Sample Id:Sample_02_174
Genome:Homo sapiens-hg19
Series: GSE74238
Biosample Type:Cell line
Tissue Type:Lung
Sample Name:IMR-90_DMSO_2
PMID: 27099234|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_17400001 chr13 111032784 111077466 21 57 1 777 15 -0.074508
SE_02_17400002 chr11 65238749 65268494 22 54 1 790 9 -0.00298748
SE_02_17400003 chr16 29272552 29300866 16 41 1 582 10 -0.00434032
SE_02_17400004 chr22 30579041 30605618 22 51 1 783 6 0.118477
SE_02_17400005 chr15 67383944 67420450 20 53 2 1111 9 0.0427699
SE_02_17400006 chr16 88267764 88280310 17 28 1 463 7 0.00216316
SE_02_17400007 chr11 12087978 12109370 23 34 1 684 5 0.0311939
SE_02_17400008 chr19 13950618 13962827 22 58 1 702 4 0.0524585
SE_02_17400009 chr2 238079752 238107847 23 26 1 759 10 -0.0378907
SE_02_17400010 chr5 172324409 172348418 18 33 1 552 7 0.0116356
SE_02_17400011 chr1 235106181 235133827 18 36 1 603 9 0.0266112
SE_02_17400012 chr11 12180476 12204487 19 11 1 678 8 0.040825
SE_02_17400013 chr8 13209854 13234588 17 23 1 605 7 0.0136067
SE_02_17400014 chr17 76311901 76350068 22 44 1 714 8 0.0112546
SE_02_17400015 chr12 109219044 109233417 21 32 1 515 3 0.0236701
SE_02_17400016 chr13 33765935 33788567 15 38 1 759 6 0.0637546
SE_02_17400017 chr3 141120590 141140439 16 62 1 582 7 0.096156
SE_02_17400018 chr15 33148524 33166010 15 26 1 357 10 0.0456411
SE_02_17400019 chr21 43459344 43478079 21 18 2 853 4 -0.0515939
SE_02_17400020 chr17 38698038 38709559 21 30 1 585 6 0.0385262
SE_02_17400021 chr21 47468787 47486783 21 18 1 629 6 -0.113027
SE_02_17400022 chr9 132243937 132260233 20 45 1 795 7 0.031671
SE_02_17400023 chr17 66373776 66381402 18 33 1 504 6 0.0612494
SE_02_17400024 chr10 4282652 4296627 17 37 1 490 6 -0.06041
SE_02_17400025 chr16 70725356 70750098 23 27 1 603 6 0.0295502
SE_02_17400026 chr15 39419523 39432784 16 38 1 555 7 0.0300606
SE_02_17400027 chr6 106040520 106057987 20 23 1 629 5 0.118459
SE_02_17400028 chr5 77881661 77894140 19 35 1 825 7 0.0657011
SE_02_17400029 chr1 85780000 85796905 19 17 1 718 5 0.132916
SE_02_17400030 chr9 73021635 73035849 22 31 1 974 4 0.192324
SE_02_17400031 chr18 3595673 3606760 18 32 1 512 3 0.0514474
SE_02_17400032 chr3 134179304 134192923 18 24 1 399 6 0.0410426
SE_02_17400033 chr7 137663470 137685238 20 16 1 530 4 0.0542192
SE_02_17400034 chr17 7738247 7748254 21 38 2 606 4 0.147486
SE_02_17400035 chr3 149099363 149107091 18 21 1 501 2 0.0484581
SE_02_17400036 chr2 1724705 1741184 19 14 1 636 6 -0.0375618
SE_02_17400037 chr7 130595307 130602944 19 25 1 624 4 0.0709438
SE_02_17400038 chr8 49493296 49504426 21 15 1 479 4 -0.0313595
SE_02_17400039 chr8 142156143 142164511 20 29 1 598 5 -0.0627918
SE_02_17400040 chr5 64486532 64505962 11 9 1 205 3 0.133319
SE_02_17400041 chr14 62028073 62033684 18 20 1 735 3 0.0552247
SE_02_17400042 chr17 76370812 76382721 19 25 1 612 4 0.0613864
SE_02_17400043 chr1 86041825 86048632 20 15 0 549 2 0.185599
SE_02_17400044 chr2 238187204 238201040 17 19 1 480 6 -0.0145857
SE_02_17400045 chr1 205263153 205282776 21 22 1 656 7 0.061355
SE_02_17400046 chr4 13908403 13923498 19 16 1 502 6 0.0237168
SE_02_17400047 chr5 395063 401897 19 20 1 484 2 -0.086153
SE_02_17400048 chr1 7530745 7551603 19 18 1 473 3 -0.0194743
SE_02_17400049 chr1 234739369 234748949 18 21 1 467 5 0.269341
SE_02_17400050 chr14 77492838 77507724 23 29 1 749 4 0.170764
SE_02_17400051 chr2 129057910 129063938 16 20 1 673 4 -0.0280602
SE_02_17400052 chr13 114880524 114896386 19 23 1 619 5 -0.136153
SE_02_17400053 chr2 67483120 67489544 17 20 1 541 3 0.105763
SE_02_17400054 chr1 23881508 23889837 21 22 1 627 3 0.161335
SE_02_17400055 chr13 110992732 111013527 19 24 1 625 5 -0.0559085
SE_02_17400056 chr6 37101988 37112901 15 16 1 357 4 0.1044
SE_02_17400057 chr1 145113443 145116141 1 23 0 59 1 0.140628
SE_02_17400058 chr12 109247653 109251367 19 15 1 499 3 0.046536
SE_02_17400059 chr6 136332516 136337755 17 16 1 336 5 0.151246
SE_02_17400060 chr10 95195419 95206004 20 28 1 605 5 0.0426339
SE_02_17400061 chr20 1302759 1308016 17 34 1 857 4 0.0619722
SE_02_17400062 chr6 132443492 132454252 14 8 1 230 2 0.0802116
SE_02_17400063 chr20 49976495 49983863 21 12 1 599 3 -0.0122816
SE_02_17400064 chr17 35843726 35853745 17 16 1 342 3 0.0936938
SE_02_17400065 chr3 15676460 15689726 20 19 1 526 5 0.0860517
SE_02_17400066 chr17 48286222 48297939 22 17 2 718 4 0.0491379
SE_02_17400067 chr1 165865102 165869071 19 12 1 510 2 0.0511508
SE_02_17400068 chr9 73204811 73217415 21 5 1 444 4 0.104522
SE_02_17400069 chr7 1572640 1578882 19 32 1 711 3 -0.0755257
SE_02_17400070 chr5 97643853 97650948 20 19 1 517 4 0.010565
SE_02_17400071 chr13 31438897 31447379 19 7 1 503 4 0.0990652
SE_02_17400072 chr22 36720685 36727061 15 16 1 445 4 0.0590311
SE_02_17400073 chr12 76413588 76423221 12 12 1 317 2 0.10303
SE_02_17400074 chr11 118479393 118490424 18 4 1 440 3 0.147295
SE_02_17400075 chr8 119017429 119032047 14 7 1 407 4 0.0411047
SE_02_17400076 chr11 28853843 28860934 14 21 1 397 5 0.0799798
SE_02_17400077 chr11 126860734 126863942 17 17 1 379 1 0.0624034
SE_02_17400078 chr2 175642559 175653321 20 12 1 418 4 0.0773476
SE_02_17400079 chr19 41828347 41834192 16 20 2 536 4 0.0715046
SE_02_17400080 chr17 41437412 41445832 33 21 1 626 2 -0.0434549
SE_02_17400081 chr2 238121654 238132681 20 16 1 575 5 0.0157196
SE_02_17400082 chr8 103818010 103822862 19 28 1 905 5 0.0750086
SE_02_17400083 chr19 45946688 45960087 19 39 1 559 4 0.0504336
SE_02_17400084 chr16 86328485 86338141 17 18 1 490 3 -0.0853396
SE_02_17400085 chr12 46943217 46950202 14 11 1 278 2 0.108522
SE_02_17400086 chr8 13123009 13134175 17 15 1 481 3 0.0583694
SE_02_17400087 chr7 43686289 43698838 19 8 1 384 4 0.0679908
SE_02_17400088 chr5 52701766 52716107 12 21 1 263 3 0.0491791
SE_02_17400089 chr11 95883521 95890145 20 18 2 716 3 0.0586881
SE_02_17400090 chr6 148843559 148852359 15 14 1 291 4 0.0443669
SE_02_17400091 chr15 67437504 67443006 17 30 1 600 3 0.0398191
SE_02_17400092 chr7 74508060 74510369 10 32 0 685 1 0.128263
SE_02_17400093 chr5 172224860 172234214 18 24 1 473 5 -0.00662469
SE_02_17400094 chr14 35015287 35026227 2 4 0 17 2 -0.0549963
SE_02_17400095 chr10 95218584 95228408 20 3 1 400 3 0.0319109
SE_02_17400096 chr5 95193484 95198373 19 12 1 492 4 0.0280669
SE_02_17400097 chr7 73892234 73897677 13 19 1 445 4 0.0218064
SE_02_17400098 chr9 133721387 133736207 17 9 1 431 4 0.0462173
SE_02_17400099 chr5 178692892 178703855 19 11 1 454 2 -0.00497854
SE_02_17400100 chr1 156073369 156077464 14 34 1 602 4 0.0756469
SE_02_17400101 chr10 121005973 121013113 14 4 1 238 3 0.0917803
SE_02_17400102 chr3 45684212 45689303 16 30 2 518 5 0.030735
SE_02_17400103 chr7 55198354 55202394 20 11 1 504 3 -0.0884548
SE_02_17400104 chr3 15836035 15847235 15 13 1 341 4 0.105775
SE_02_17400105 chr8 128863882 128868072 19 20 1 704 4 -0.0482411
SE_02_17400106 chr3 55194886 55205439 18 12 1 468 3 0.123287
SE_02_17400107 chr20 52444172 52447169 13 34 0 572 3 0.116373
SE_02_17400108 chr20 19795225 19798497 16 18 1 490 3 0.0699113
SE_02_17400109 chr1 32409949 32422273 21 19 1 451 3 0.0696104
SE_02_17400110 chr3 115502782 115519851 22 21 1 487 5 0.0260669
SE_02_17400111 chr9 114821376 114836263 18 17 1 410 3 0.0289602
SE_02_17400112 chr6 136904518 136915830 17 14 1 504 4 0.0502408
SE_02_17400113 chr3 141085175 141087973 19 17 1 724 2 0.196812
SE_02_17400114 chr3 156533272 156537131 19 23 1 713 3 0.0992588
SE_02_17400115 chr2 47260408 47270323 17 12 1 425 3 0.0584861
SE_02_17400116 chr14 90377704 90383210 15 17 1 356 2 0.11611
SE_02_17400117 chr9 131901791 131908947 21 18 1 540 3 0.0493959
SE_02_17400118 chr7 134303671 134310406 10 13 1 253 3 0.0637447
SE_02_17400119 chr17 59385080 59388506 10 18 1 308 3 0.153363
SE_02_17400120 chr1 156471846 156475456 18 22 1 536 3 0.176609
SE_02_17400121 chr20 48920817 48926232 19 25 1 575 2 0.0693379
SE_02_17400122 chr10 17065653 17072095 21 19 1 419 4 0.0287432
SE_02_17400123 chr2 66802751 66809413 10 13 0 369 3 0.201763
SE_02_17400124 chr12 94170797 94179877 14 22 1 395 3 0.0719343
SE_02_17400125 chr13 49887670 49894898 18 23 1 613 4 0.0463463
SE_02_17400126 chr16 88337079 88341582 20 14 1 587 3 -0.0499708
SE_02_17400127 chr11 65046911 65060578 18 23 1 365 3 0.0814623
SE_02_17400128 chr3 5063022 5068765 17 21 0 616 2 0.0499775
SE_02_17400129 chr7 104585724 104604419 20 3 1 346 3 0.0421694
SE_02_17400130 chr10 106087892 106098583 17 12 0 392 3 0.0695057
SE_02_17400131 chr6 30736999 30750317 19 11 1 459 2 0.0284021
SE_02_17400132 chr15 99433315 99441662 16 17 1 499 4 0.057676
SE_02_17400133 chr10 106058671 106061404 16 11 1 249 3 0.0976846
SE_02_17400134 chr13 113832145 113841733 21 4 1 336 3 -0.0728117
SE_02_17400135 chr17 8056836 8060604 15 31 1 436 3 0.106343
SE_02_17400136 chr12 25537727 25540453 21 15 1 542 1 0.104522
SE_02_17400137 chr20 55004842 55015888 8 7 0 224 3 0.0285088
SE_02_17400138 chr8 49803783 49816591 17 14 1 500 3 -0.0279801
SE_02_17400139 chr5 131430040 131439635 17 12 1 531 3 0.0846387
SE_02_17400140 chr8 36999786 37003101 18 12 1 537 4 -0.0474003
SE_02_17400141 chr8 129188318 129196423 18 24 1 545 3 0.0274335
SE_02_17400142 chr7 17408738 17412426 15 16 1 403 4 0.057464
SE_02_17400143 chr12 52426196 52431864 13 13 1 365 4 0.103961
SE_02_17400144 chr5 148344791 148352728 19 10 1 511 3 0.00617213
SE_02_17400145 chr7 5731190 5735195 15 25 1 765 4 0.12672
SE_02_17400146 chr2 232468992 232479610 20 24 1 714 3 0.0384773
SE_02_17400147 chr11 111605204 111607592 16 15 1 493 2 0.0215618
SE_02_17400148 chr16 88364634 88366974 21 9 1 532 2 -0.0282207
SE_02_17400149 chr8 26465789 26469084 17 20 1 431 3 0.0678011
SE_02_17400150 chr2 69390686 69405705 19 19 1 588 3 0.0805308
SE_02_17400151 chr17 2143205 2148692 19 11 0 586 2 0.0920687
SE_02_17400152 chr9 129893349 129896881 19 12 1 584 2 0.0884851
SE_02_17400153 chr16 11172170 11184328 10 7 1 265 2 0.0214825
SE_02_17400154 chr5 148585298 148592644 16 15 1 477 2 0.0514178
SE_02_17400155 chr12 109896189 109902094 13 17 1 535 6 0.0508771
SE_02_17400156 chr8 23211782 23224407 14 8 1 448 3 0.0165506
SE_02_17400157 chr12 13251569 13254993 16 20 1 444 3 0.131124
SE_02_17400158 chr19 38490397 38495859 19 18 1 419 3 0.066947
SE_02_17400159 chr18 46520472 46525248 21 16 1 483 2 0.0854923
SE_02_17400160 chr10 3847647 3853735 10 18 1 480 2 -0.0358624
SE_02_17400161 chr3 11642307 11646128 16 10 1 368 4 0.0939744
SE_02_17400162 chr2 69469159 69481044 9 33 1 226 2 0.127008
SE_02_17400163 chr7 104652433 104655033 22 31 1 798 1 0.227728
SE_02_17400164 chr5 368704 374742 14 23 1 456 2 -0.0131184
SE_02_17400165 chr7 47611500 47621719 16 12 1 400 3 0.0300973
SE_02_17400166 chr6 157428033 157430869 13 19 1 324 4 0.050037
SE_02_17400167 chr20 49943134 49952715 19 9 1 424 3 0.0188493
SE_02_17400168 chr21 11186012 11186886 10 12 0 392 1 -0.144294
SE_02_17400169 chr19 18760301 18771144 17 16 1 509 4 -0.0136352
SE_02_17400170 chr1 67028413 67031019 18 9 1 471 3 0.0277547
SE_02_17400171 chr15 30916580 30919056 17 15 1 453 1 0.030909
SE_02_17400172 chr8 40029700 40033383 16 13 1 303 4 -7.89E-05
SE_02_17400173 chr1 150576477 150586104 17 17 1 452 4 0.0368916
SE_02_17400174 chr16 84865409 84870852 17 12 1 457 5 -0.0427012
SE_02_17400175 chr19 31705197 31715957 19 15 1 406 3 0.0182085
SE_02_17400176 chr18 53167992 53178328 12 13 1 451 4 0.114897
SE_02_17400177 chr7 102512247 102516186 10 13 1 137 2 0.101462
SE_02_17400178 chr6 37207478 37211283 12 8 1 567 2 0.0687855
SE_02_17400179 chr2 238163138 238166875 9 17 0 373 3 0.0387326
SE_02_17400180 chr2 99071699 99074971 10 16 1 245 3 0.0486033
SE_02_17400181 chr1 156092920 156100120 15 17 1 654 3 0.103962
SE_02_17400182 chr16 70769352 70780665 16 3 1 267 3 0.00750617

Master TFs Network

CRC model in Sample_02_174