General Details

Sample Id:Sample_02_160
Genome:Homo sapiens-hg19
Series: GSE72468
Biosample Type:Cell line
Tissue Type:Brain
Sample Name:U87_FBS
PMID: 26455392|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_16000001 chr1 121483928 121485456 0 5 0 16 1 NA
SE_02_16000002 chr6 58773619 58780188 0 6 0 146 2 NA
SE_02_16000003 chr19 27731761 27739607 0 4 0 46 8 NA
SE_02_16000004 chr10 42356026 42408374 6 8 0 276 17 NA
SE_02_16000005 chr18 18511276 18520419 0 8 0 39 6 NA
SE_02_16000006 chr2 92281134 92317830 0 8 0 322 6 NA
SE_02_16000007 chr11 65238719 65276352 6 106 1 807 16 0.0334276
SE_02_16000008 chr20 33889849 33909663 6 77 0 861 9 0.112619
SE_02_16000009 chr7 130566309 130607180 6 92 0 933 24 0.0260474
SE_02_16000010 chr6 158440318 158491506 6 60 0 737 15 -0.0277434
SE_02_16000011 chr20 45959772 45990228 6 68 0 480 9 0.128595
SE_02_16000012 chr1 145190156 145242208 4 56 0 234 8 0.0913913
SE_02_16000013 chr1 120579225 120629818 6 48 0 272 8 0.098209
SE_02_16000014 chr17 48104286 48142971 6 74 0 484 10 0.0449105
SE_02_16000015 chr22 46451701 46485624 6 81 1 848 14 0.0680283
SE_02_16000016 chr6 44008749 44041652 6 80 0 872 13 0.0887633
SE_02_16000017 chr5 139015508 139059177 6 52 0 636 12 0.128714
SE_02_16000018 chr17 29876427 29924550 6 62 0 683 12 0.0455321
SE_02_16000019 chr11 65658050 65684819 6 69 0 855 12 0.06302
SE_02_16000020 chr3 170426230 170471012 6 37 0 285 10 0.0476698
SE_02_16000021 chr17 75281716 75329892 6 41 1 532 10 -0.0124607
SE_02_16000022 chr14 62013631 62052993 6 45 0 542 11 0.0758184
SE_02_16000023 chr10 42596676 42600302 1 2 0 67 2 NA
SE_02_16000024 chr1 36808815 36853960 6 44 1 752 8 0.0613927
SE_02_16000025 chr12 57526709 57561789 6 53 0 664 10 0.113627
SE_02_16000026 chr22 36724832 36764611 6 49 1 740 13 0.0261701
SE_02_16000027 chr11 65184718 65205668 6 79 0 641 9 0.0246774
SE_02_16000028 chr3 141049445 141088864 6 72 0 698 9 0.0789974
SE_02_16000029 chr9 130301485 130346261 6 50 0 563 13 0.014045
SE_02_16000030 chr3 46130274 46157144 6 48 0 376 8 0.0350294
SE_02_16000031 chr17 76311187 76354066 6 79 0 532 13 0.0218445
SE_02_16000032 chr14 77492455 77510255 6 62 0 931 7 0.17613
SE_02_16000033 chr16 55503792 55534900 6 41 0 671 7 0.0401137
SE_02_16000034 chr5 149401498 149447128 6 58 0 351 14 0.0673677
SE_02_16000035 chr16 46416716 46428202 1 6 0 50 3 NA
SE_02_16000036 chr12 6641017 6663254 6 58 0 539 6 0.0631235
SE_02_16000037 chr7 134133130 134166493 6 66 0 727 13 0.0312885
SE_02_16000038 chr14 69246132 69262879 6 55 0 748 5 0.140831
SE_02_16000039 chr9 132236281 132260419 6 55 0 608 8 0.024187
SE_02_16000040 chr22 20858297 20906699 6 42 0 457 7 0.0213
SE_02_16000041 chr17 55944834 55971188 6 44 0 661 10 0.0814107
SE_02_16000042 chr1 156072827 156100148 6 78 1 912 17 0.0893744
SE_02_16000043 chr18 3593187 3606435 6 57 0 552 3 0.0694329
SE_02_16000044 chr2 238368073 238411085 6 47 1 802 14 -0.0126351
SE_02_16000045 chr5 172295025 172358896 6 37 0 460 12 0.0134009
SE_02_16000046 chr8 67419403 67449266 6 51 1 442 9 0.0536334
SE_02_16000047 chr9 37994800 38048596 6 23 0 347 14 0.0631627
SE_02_16000048 chr21 39634975 39679185 6 35 0 319 10 0.038757
SE_02_16000049 chr3 123451530 123477991 6 39 0 384 7 0.0740656
SE_02_16000050 chr10 95217812 95232769 6 47 0 318 12 0.0190673
SE_02_16000051 chr18 14968730 14977580 6 48 0 477 4 -0.0570632
SE_02_16000052 chr10 80712562 80738371 6 43 0 348 6 0.054483
SE_02_16000053 chr5 140886893 140909068 6 34 0 262 7 0.148602
SE_02_16000054 chr5 42985065 43010480 6 54 0 491 5 -0.0729058
SE_02_16000055 chr12 120667577 120686420 6 38 0 346 8 0.0596404
SE_02_16000056 chr10 106059586 106099351 6 30 0 458 9 0.079457
SE_02_16000057 chr7 73116105 73136513 6 42 0 368 8 0.048333
SE_02_16000058 chr1 9335185 9381566 6 53 0 617 11 -0.00936496
SE_02_16000059 chr13 43381757 43423401 5 47 0 226 11 0.0530128
SE_02_16000060 chr1 78001711 78011640 5 37 0 373 6 0.0080874
SE_02_16000061 chr20 52507891 52542978 6 68 0 652 12 0.0359375
SE_02_16000062 chr8 23193071 23214594 6 32 1 572 10 0.00841914
SE_02_16000063 chr6 52367974 52387015 6 49 0 326 12 0.052341
SE_02_16000064 chr10 80886311 80919748 6 24 0 254 12 0.0512707
SE_02_16000065 chr21 43035111 43069151 6 38 0 223 9 -0.0375589
SE_02_16000066 chr7 129465138 129494058 6 45 0 331 7 0.0562207
SE_02_16000067 chr11 12178260 12205437 6 36 0 464 11 0.0412607
SE_02_16000068 chr3 5018764 5037808 6 40 0 506 7 0.152464
SE_02_16000069 chr20 42567501 42604433 6 32 0 348 9 0.0487948
SE_02_16000070 chr14 69148886 69172079 6 35 0 509 7 0.0426396
SE_02_16000071 chr1 151945048 151974135 6 38 0 400 9 0.0751598
SE_02_16000072 chr4 49104490 49123249 6 0 0 143 5 NA
SE_02_16000073 chr7 134274358 134305572 6 33 0 316 6 0.0320531
SE_02_16000074 chr17 13424432 13466610 6 25 0 425 7 0.0349499
SE_02_16000075 chr15 90363963 90392325 6 60 0 571 8 0.0151387
SE_02_16000076 chr2 208103389 208124316 6 50 1 743 5 0.0846924
SE_02_16000077 chr10 74056791 74095958 6 28 1 327 10 0.0381642
SE_02_16000078 chr19 1250956 1266917 6 46 1 516 5 0.0398226
SE_02_16000079 chr22 30591167 30609752 6 60 0 405 10 0.0687552
SE_02_16000080 chr17 57905821 57924584 6 48 0 334 11 0.0829215
SE_02_16000081 chr11 35183897 35202246 6 50 0 313 6 0.0472003
SE_02_16000082 chr5 77814578 77847460 6 19 0 286 10 0.0259836
SE_02_16000083 chr20 60931536 60956568 6 40 0 430 5 -0.0372754
SE_02_16000084 chr10 33541342 33563432 6 45 0 647 11 0.10626
SE_02_16000085 chr1 145008763 145029409 2 30 0 222 3 0.051251
SE_02_16000086 chr11 12087254 12109504 6 29 0 402 4 0.0308607
SE_02_16000087 chr10 79260562 79274278 6 36 1 473 5 0.0511459
SE_02_16000088 chr3 171846599 171887651 6 39 0 476 12 0.0420836
SE_02_16000089 chr11 46294018 46322076 6 23 0 373 8 0.113387
SE_02_16000090 chr12 66024682 66052125 6 53 0 385 8 0.0367982
SE_02_16000091 chr15 33117291 33163343 6 37 0 357 14 0.0486723
SE_02_16000092 chr19 13949488 13973176 6 38 0 328 7 0.0320848
SE_02_16000093 chr9 131883396 131904195 6 35 0 302 6 0.063069
SE_02_16000094 chr3 10230660 10248140 6 44 0 777 10 -0.00218565
SE_02_16000095 chr12 125388897 125408947 6 59 1 735 7 0.0133988
SE_02_16000096 chr17 73686753 73697370 6 29 0 592 4 0.0463735
SE_02_16000097 chr5 149865887 149878443 6 42 0 338 5 0.0587512
SE_02_16000098 chr5 150158256 150170456 6 47 0 438 6 0.0609712
SE_02_16000099 chr14 96552550 96571835 6 36 0 426 9 -0.0285148

Master TFs Network

CRC model in Sample_02_160