General Details

Sample Id:Sample_02_141
Genome:Homo sapiens-hg19
Series: GSE71510
Biosample Type:Cell line
Tissue Type:Colon
Sample Name:HCT116_Heterozygous_ARID1A-KO
PMID: 27941798|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_14100001 chr4 30744552 30965399 41 272 3 2495 29 0.045062
SE_02_14100002 chr10 114235022 114310117 38 131 4 1473 5 0.132264
SE_02_14100003 chr9 21549307 21594795 44 141 2 1538 2 0.0827013
SE_02_14100004 chr4 102022082 102091517 32 134 2 1268 8 0.0328133
SE_02_14100005 chr8 94832650 94951707 49 204 2 2695 13 0.0702362
SE_02_14100006 chr12 76090375 76165475 35 161 2 1804 13 0.0577757
SE_02_14100007 chr4 75542936 75597122 37 110 2 1517 8 0.00924204
SE_02_14100008 chr18 3592054 3627945 42 145 1 1472 7 0.0215027
SE_02_14100009 chr12 89310936 89365682 37 125 2 1217 9 0.0578037
SE_02_14100010 chr3 111613685 111686951 38 130 1 1373 9 0.0694807
SE_02_14100011 chr12 76015760 76063517 37 119 3 1505 5 0.068188
SE_02_14100012 chr2 226977985 227057921 38 124 2 1627 10 0.0369878
SE_02_14100013 chr7 130576947 130606124 33 126 1 1293 1 NA
SE_02_14100014 chr17 57830386 57865876 37 84 1 1096 4 0.0660121
SE_02_14100015 chr9 21667822 21693474 39 64 2 1106 3 0.0502019
SE_02_14100016 chr1 8079493 8159852 45 123 1 1933 11 0.0225373
SE_02_14100017 chr17 57904363 57925527 42 72 1 1065 3 0.0768309
SE_02_14100018 chr1 66757912 66821669 37 125 1 1225 8 0.0556872
SE_02_14100019 chr4 31018645 31093118 34 134 2 1646 13 0.0395945
SE_02_14100020 chr3 98672490 98706061 38 89 1 1118 6 0.0720757
SE_02_14100021 chr1 84606860 84644598 34 81 1 1017 6 0.100467
SE_02_14100022 chr2 182638906 182683261 41 74 2 1408 7 0.0609922
SE_02_14100023 chr17 62646135 62710587 43 127 1 1255 10 0.0304482
SE_02_14100024 chr8 126655925 126715560 42 123 2 1587 7 0.0127305
SE_02_14100025 chr12 66211773 66231884 38 78 1 1078 2 0.077311
SE_02_14100026 chr10 28378113 28429136 25 77 1 912 7 0.0433291
SE_02_14100027 chr8 128217840 128239204 35 89 1 1291 2 0.0355637
SE_02_14100028 chr2 227513607 227540770 35 77 1 1054 2 0.0424981
SE_02_14100029 chr12 65881043 65932750 35 95 2 949 7 0.0354576
SE_02_14100030 chr6 159124204 159160754 43 102 1 1307 6 -0.0249161
SE_02_14100031 chr20 30281998 30319394 40 135 2 1792 10 0.106222
SE_02_14100032 chr6 30709107 30754570 44 115 3 1793 6 0.0394566
SE_02_14100033 chr11 65238751 65275527 46 119 1 1404 7 0.0352815
SE_02_14100034 chr7 130666451 130701954 34 113 1 1368 6 0.0314389
SE_02_14100035 chr17 56465337 56496409 40 113 3 1141 8 0.168158
SE_02_14100036 chr2 224387100 224442507 37 79 2 1153 7 0.0361341
SE_02_14100037 chr1 8214086 8273323 36 126 3 1410 10 -0.0370413
SE_02_14100038 chr3 98252779 98305630 36 75 1 1068 8 0.0620455
SE_02_14100039 chr2 220549040 220573187 39 95 1 1413 4 0.0686886
SE_02_14100040 chr9 132238748 132260703 34 119 2 1644 4 0.0248321
SE_02_14100041 chr12 46822737 46869563 32 77 1 1060 5 0.0786392
SE_02_14100042 chr4 75396635 75411724 29 76 1 961 2 0.00454077
SE_02_14100043 chr6 129962217 130012014 32 69 1 1023 7 0.0512476
SE_02_14100044 chr18 3647723 3668508 38 92 1 1125 3 0.0486002
SE_02_14100045 chr12 46940985 46952826 25 47 1 615 1 0.102372
SE_02_14100046 chr1 172839885 172904450 35 106 1 1186 7 0.0406761
SE_02_14100047 chr5 91885885 91899985 25 35 2 523 2 0.135644
SE_02_14100048 chr3 114357870 114373893 32 66 1 770 3 0.114083
SE_02_14100049 chr20 328197 365127 39 121 2 1510 7 0.0150408
SE_02_14100050 chr3 139016628 139048500 38 85 1 1348 5 0.0535654
SE_02_14100051 chr4 75226954 75262105 38 73 3 997 5 0.0198868
SE_02_14100052 chr10 102121754 102135580 38 57 1 867 3 0.0924806
SE_02_14100053 chr7 5458264 5470224 36 97 2 1433 1 0.123997
SE_02_14100054 chr11 122056336 122069619 29 51 1 905 1 0.0913029
SE_02_14100055 chr10 95217671 95242597 35 85 3 941 8 0.02522
SE_02_14100056 chr12 125388877 125426059 46 114 1 1848 6 -0.00139951
SE_02_14100057 chr2 62795027 62808313 35 47 2 771 2 0.0928609
SE_02_14100058 chr6 129809549 129824393 33 85 1 1192 2 0.0962293
SE_02_14100059 chr16 69429295 69452551 37 73 2 1136 3 0.0485425
SE_02_14100060 chr6 159270227 159292380 41 68 2 951 3 0.0278183
SE_02_14100061 chr4 79454461 79491320 37 80 1 1247 7 0.0327475
SE_02_14100062 chr6 151356317 151403968 38 86 2 1272 8 0.0046566
SE_02_14100063 chr11 118779476 118801383 39 144 2 1602 4 0.182515
SE_02_14100064 chr12 66041060 66053507 34 35 1 847 2 0.0548862
SE_02_14100065 chr10 105868909 105884071 39 62 1 1153 2 0.0801207
SE_02_14100066 chr4 187725986 187768390 38 92 1 1322 6 0.00764096
SE_02_14100067 chr2 182740244 182775814 40 58 1 866 6 0.0973276
SE_02_14100068 chr4 169451912 169496667 39 72 2 1109 9 -0.00612602
SE_02_14100069 chr19 44257112 44289967 37 90 1 1337 5 0.0465778
SE_02_14100070 chrX 45602178 45638766 32 98 1 1199 11 0.0814346
SE_02_14100071 chr1 28831273 28838054 34 33 2 682 1 -0.040143
SE_02_14100072 chr10 32215187 32237367 39 109 1 1391 6 0.0455511
SE_02_14100073 chr19 13251479 13283634 45 134 2 1717 6 0.0127128
SE_02_14100074 chr6 74228786 74234632 39 45 1 867 1 0.0707632
SE_02_14100075 chr6 32934672 32941170 37 81 2 1116 1 0.12059
SE_02_14100076 chr12 52537152 52558465 41 90 3 1269 2 0.00805767
SE_02_14100077 chr6 130053579 130075193 31 47 1 860 3 0.046607
SE_02_14100078 chr3 98610549 98622481 34 73 1 893 1 0.0766308
SE_02_14100079 chr1 94764148 94794521 33 50 1 974 4 0.0685193
SE_02_14100080 chr7 116139744 116168733 35 83 2 936 3 0.0896638
SE_02_14100081 chr22 46461509 46479200 33 127 2 1396 4 0.1048
SE_02_14100082 chr19 2031753 2062760 39 106 2 1387 5 -0.0287915
SE_02_14100083 chr4 101939981 101962831 31 42 1 1001 4 0.104105
SE_02_14100084 chr20 30180239 30199687 45 119 1 1867 3 0.0443713
SE_02_14100085 chr4 113088296 113096420 28 42 2 730 1 0.108397
SE_02_14100086 chr10 114708777 114720358 35 79 1 939 1 0.260033
SE_02_14100087 chr2 169046434 169078632 35 85 1 917 7 0.0591638
SE_02_14100088 chr2 70311199 70316724 30 58 1 909 1 0.184327
SE_02_14100089 chr19 13950444 13973352 38 116 3 1395 5 0.0302988
SE_02_14100090 chr10 101534470 101546414 32 62 1 965 2 0.0499931
SE_02_14100091 chr9 21770787 21790338 30 30 1 476 4 0.0655856
SE_02_14100092 chr8 145009861 145027233 36 112 1 1444 2 0.0157863
SE_02_14100093 chr12 79271498 79291029 25 57 1 814 3 0.022703
SE_02_14100094 chr19 15938316 15949533 40 56 1 1034 2 0.00660911
SE_02_14100095 chr7 116062762 116106739 33 49 1 733 7 0.0537776
SE_02_14100096 chr17 39105387 39116206 37 64 1 1091 1 0.0709339
SE_02_14100097 chr5 141732132 141745854 39 61 1 956 3 0.0418763
SE_02_14100098 chr19 39888175 39903861 41 122 2 1559 3 0.0767876
SE_02_14100099 chr1 156073182 156100849 45 119 1 1867 6 0.0934365
SE_02_14100100 chr17 73073140 73092910 36 87 1 1084 4 -0.00108222
SE_02_14100101 chr3 110285066 110305076 32 41 1 690 4 0.0326107
SE_02_14100102 chr22 24595925 24606053 29 49 1 696 2 -0.00851214
SE_02_14100103 chr18 3246143 3264132 39 65 2 981 3 0.0718232
SE_02_14100104 chr22 30591120 30622223 33 96 2 1285 4 0.0377729
SE_02_14100105 chr12 13022934 13057781 38 98 2 1216 6 0.00651096
SE_02_14100106 chr10 23103915 23115502 32 44 2 757 2 0.0296364
SE_02_14100107 chr17 54990032 54995157 41 42 1 885 1 0.0597813
SE_02_14100108 chr12 76411812 76427476 37 80 1 1031 5 0.11718
SE_02_14100109 chr12 46764212 46781205 40 66 1 1038 2 0.0942765
SE_02_14100110 chr17 15848362 15870611 35 76 1 1091 5 0.0205613
SE_02_14100111 chr8 126225152 126244193 34 52 1 865 4 0.0673894
SE_02_14100112 chr15 93442019 93465901 35 64 3 1238 3 0.0609587
SE_02_14100113 chr14 69251509 69265109 37 81 2 1144 3 0.15828
SE_02_14100114 chr11 65185401 65194398 42 101 2 1329 2 0.0286662
SE_02_14100115 chr20 380695 400397 32 92 1 1085 3 0.0472364
SE_02_14100116 chr7 27202732 27213767 34 81 2 1001 1 0.230846
SE_02_14100117 chr16 2200507 2214090 40 64 2 943 2 -0.0206866
SE_02_14100118 chr12 122221704 122242060 36 109 3 1043 6 0.0516756
SE_02_14100119 chr2 224560300 224565758 28 12 1 725 1 0.045257
SE_02_14100120 chr12 65819955 65830721 26 18 2 604 2 0.059429
SE_02_14100121 chr15 93343549 93376396 38 86 1 1173 5 0.0167528
SE_02_14100122 chr18 68023932 68053146 31 56 2 904 5 0.0236941
SE_02_14100123 chr18 3446353 3455782 38 69 3 1129 1 0.119702
SE_02_14100124 chr20 61364413 61373617 33 75 1 1107 2 -0.0895648
SE_02_14100125 chr2 240166602 240202401 33 95 1 1556 6 -0.103916
SE_02_14100126 chr20 49340637 49361767 36 71 1 1151 4 0.0701356
SE_02_14100127 chr7 116325832 116348514 28 67 2 1012 4 0.136349
SE_02_14100128 chr17 48127576 48143118 37 95 2 1280 3 0.094964
SE_02_14100129 chr16 3069359 3074950 33 76 1 1179 1 0.147297
SE_02_14100130 chr1 156715580 156722980 32 66 1 733 1 0.144124
SE_02_14100131 chr1 154942395 154949404 31 74 2 1003 1 0.120936
SE_02_14100132 chr5 148928453 148943734 39 64 1 1390 2 0.0471242
SE_02_14100133 chr19 18474552 18500957 39 102 1 1448 6 -0.0030991
SE_02_14100134 chr22 37712418 37728645 40 80 1 1255 4 0.00618712
SE_02_14100135 chrX 45567523 45578915 31 46 1 863 3 0.088629
SE_02_14100136 chr2 85131552 85154568 43 71 1 1295 3 0.0412585
SE_02_14100137 chr12 76326140 76354742 29 62 1 959 7 0.0500285
SE_02_14100138 chr12 116933117 116968068 42 84 1 1248 6 0.0224522
SE_02_14100139 chr6 34191278 34213007 38 104 2 1358 5 0.0974705
SE_02_14100140 chr5 137909219 137912221 32 36 2 542 1 0.0194417
SE_02_14100141 chr6 43593435 43598614 27 42 1 957 1 0.151572
SE_02_14100142 chr12 76255435 76294618 24 45 1 795 7 0.0552387
SE_02_14100143 chr19 1744716 1751120 35 63 2 1203 2 -0.0427027
SE_02_14100144 chrX 46175488 46189554 28 49 2 805 2 0.101993
SE_02_14100145 chr8 126122363 126143411 36 46 2 950 3 0.0304884
SE_02_14100146 chr2 157188535 157200381 41 85 1 1240 2 0.214057
SE_02_14100147 chr17 17727080 17753751 34 91 2 1280 4 0.0358656
SE_02_14100148 chr20 10399125 10428696 40 41 1 907 3 0.033469
SE_02_14100149 chr6 145217097 145246573 33 49 1 830 5 NA
SE_02_14100150 chr8 17693445 17709833 29 49 1 811 3 0.0276278
SE_02_14100151 chr4 98413242 98421438 22 35 1 766 1 0.0575961
SE_02_14100152 chr5 92486027 92501313 32 18 2 733 2 0.0821291
SE_02_14100153 chr2 232526424 232552571 40 112 2 1519 5 -0.0268994
SE_02_14100154 chr17 79480022 79487735 33 60 1 941 2 -0.0616743
SE_02_14100155 chr12 66112999 66124240 33 24 1 708 2 0.0316159

Master TFs Network

CRC model in Sample_02_141