General Details

Sample Id:Sample_02_115
Genome:Homo sapiens-hg19
Series: GSE69112
Biosample Type:Cell line
Tissue Type:Mammary Gland
Sample Name:MCF-7
PMID: 26051943|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_11500001 chr17 57902251 57965415 85 140 4 2331 1 0.0354259
SE_02_11500002 chr21 41679915 41717981 70 122 4 1930 3 -0.00605602
SE_02_11500003 chr1 149801068 149835877 50 81 4 1602 2 0.0499544
SE_02_11500004 chr8 100870254 100922340 70 165 4 2245 3 0.0670673
SE_02_11500005 chr21 41738596 41789109 71 115 5 1741 7 -0.00885013
SE_02_11500006 chr2 238380247 238481703 75 181 5 2529 10 -0.03261
SE_02_11500007 chr10 8086871 8128139 69 148 5 2289 3 0.0453352
SE_02_11500008 chr10 9071456 9119370 62 136 4 1567 4 0.011503
SE_02_11500009 chr6 151971831 152028647 75 143 4 1988 6 0.0450162
SE_02_11500010 chr20 52471620 52485029 80 81 4 1924 1 NA
SE_02_11500011 chr18 33684067 33717643 65 115 4 2217 1 0.072387
SE_02_11500012 chr20 46408660 46433045 75 138 5 1818 1 0.0450485
SE_02_11500013 chr3 161032281 161092918 77 161 4 2073 5 0.0493408
SE_02_11500014 chr15 87663823 87765175 50 160 3 1776 10 0.0180494
SE_02_11500015 chr17 57828267 57884532 64 162 4 1887 5 0.0541344
SE_02_11500016 chr12 15298432 15380444 60 155 3 1803 16 0.0645741
SE_02_11500017 chr3 161118363 161142515 64 87 4 1662 1 0.0155852
SE_02_11500018 chr20 46598365 46629266 74 135 3 2174 1 -0.0208462
SE_02_11500019 chr2 226978734 227026593 63 126 4 1783 5 0.0384355
SE_02_11500020 chr11 65255185 65277255 68 99 4 1698 1 0.057252
SE_02_11500021 chr10 9218028 9262658 71 95 4 1408 3 0.0105099
SE_02_11500022 chr11 118777588 118801832 70 117 4 1878 2 0.182661
SE_02_11500023 chr2 11677885 11692968 74 95 4 1686 1 NA
SE_02_11500024 chr15 88059040 88082580 56 66 4 1314 2 NA
SE_02_11500025 chr10 8896389 8922330 58 80 3 1710 3 0.0181662
SE_02_11500026 chr9 132220210 132261344 75 114 5 2067 4 0.00797053
SE_02_11500027 chr11 85517260 85566916 70 91 3 1595 4 0.0731349
SE_02_11500028 chr6 151927094 151959325 65 95 4 1345 2 0.0478159
SE_02_11500029 chr1 109053817 109113322 64 128 3 2115 5 0.055077
SE_02_11500030 chr17 55968924 56033906 73 125 4 2297 8 0.077238
SE_02_11500031 chr15 99393310 99422240 61 108 4 1447 1 0.0838509
SE_02_11500032 chr15 88097178 88141738 51 93 4 1461 3 0.0355464
SE_02_11500033 chr2 216829696 216879149 73 125 4 1780 7 0.0346323
SE_02_11500034 chr1 215644553 215666360 55 86 4 1095 1 0.0445823
SE_02_11500035 chr14 38051373 38066990 73 77 5 1731 1 0.152155
SE_02_11500036 chr8 75646122 75673347 28 89 3 1116 2 0.0546696
SE_02_11500037 chr17 17584410 17656583 69 154 5 2411 12 0.0809125
SE_02_11500038 chr12 53287804 53303275 78 82 5 2265 1 0.0408861
SE_02_11500039 chr15 71361340 71423093 73 123 5 1907 6 0.0455626
SE_02_11500040 chr17 72743515 72761772 73 90 4 1368 1 0.0661075
SE_02_11500041 chr10 95192903 95242612 70 131 4 1485 9 0.0276182
SE_02_11500042 chr7 5456632 5470213 64 77 4 1620 2 0.116658
SE_02_11500043 chr8 102500168 102528681 80 113 4 1734 3 0.0718892
SE_02_11500044 chr15 96867990 96884830 68 78 4 1465 1 0.341385
SE_02_11500045 chr12 53336166 53348616 66 64 3 1227 1 0.062775
SE_02_11500046 chr10 8992289 9023723 46 86 4 1193 3 0.00981115
SE_02_11500047 chr14 100474757 100508157 60 123 3 1430 3 0.0637065
SE_02_11500048 chr8 91866892 91903737 62 110 4 1782 5 0.0555599
SE_02_11500049 chr5 177502523 177554868 78 133 4 2174 6 0.00831729
SE_02_11500050 chr6 27774120 27808437 60 77 4 1354 4 -0.0163168
SE_02_11500051 chr11 65183385 65199939 72 107 5 2017 1 0.027825
SE_02_11500052 chr17 73759718 73783574 72 83 5 1514 3 0.0723585
SE_02_11500053 chr8 129138275 129192592 78 111 4 1918 5 -0.0093587
SE_02_11500054 chr2 11667370 11677816 66 58 4 1266 1 0.00442514
SE_02_11500055 chr12 53355908 53373647 69 81 4 1366 1 0.0250184
SE_02_11500056 chr8 122155061 122189273 69 78 4 1558 3 0.0290609
SE_02_11500057 chr22 29188181 29201189 55 56 3 1232 1 0.0986961
SE_02_11500058 chr2 143613672 143639488 58 71 4 1472 5 0.0141165
SE_02_11500059 chr15 99287833 99325187 61 123 4 1580 5 0.0564777
SE_02_11500060 chr8 96076280 96126244 73 95 4 1685 7 0.0426693
SE_02_11500061 chr2 175497274 175549719 56 92 3 1639 5 0.0687704
SE_02_11500062 chr12 122230212 122245031 64 89 5 1408 1 0.115896
SE_02_11500063 chr5 139015371 139042551 75 128 5 2043 4 0.146533
SE_02_11500064 chr5 55707703 55729684 59 99 4 1539 3 0.0581716
SE_02_11500065 chr9 13060151 13096335 54 80 3 1380 5 0.0327002
SE_02_11500066 chr4 141635036 141679017 65 121 4 1901 9 0.0574178
SE_02_11500067 chr15 93346047 93376328 66 117 4 1413 4 0.0188288
SE_02_11500068 chr17 73543330 73562591 71 89 4 1512 4 -0.0104209
SE_02_11500069 chr14 77472143 77507980 75 112 6 2051 4 0.114077
SE_02_11500070 chr2 87778999 87801936 30 93 3 1258 2 0.0381786
SE_02_11500071 chr9 33227551 33266341 76 75 4 1544 5 0.06581
SE_02_11500072 chr22 29206617 29221521 70 55 4 1408 1 0.044195
SE_02_11500073 chr2 227652966 227667403 53 85 4 1111 1 0.201111
SE_02_11500074 chr19 39137571 39180172 66 124 4 2102 7 0.0747233
SE_02_11500075 chr2 112205872 112228306 24 98 3 1243 2 0.0445082
SE_02_11500076 chr5 66527334 66545943 68 57 4 1218 2 NA
SE_02_11500077 chr10 19497449 19537760 62 103 4 1358 4 -0.000527206
SE_02_11500078 chr17 57694494 57721983 67 63 5 1058 3 0.0719042
SE_02_11500079 chr5 57744918 57758789 58 70 4 1392 1 0.119796
SE_02_11500080 chr20 46783891 46820950 71 122 5 2337 2 -0.000925027
SE_02_11500081 chr3 150454365 150482948 73 97 4 1746 4 0.0966639
SE_02_11500082 chr10 54194410 54216358 51 61 3 1195 3 0.0579788
SE_02_11500083 chr20 46059542 46073176 71 65 4 1674 1 0.00798838
SE_02_11500084 chr1 152005644 152022720 69 55 4 1583 2 0.0453561
SE_02_11500085 chr2 97531453 97542689 47 63 3 861 1 0.115817
SE_02_11500086 chr9 137246107 137273334 71 95 4 1641 4 -0.0636678
SE_02_11500087 chr16 84127115 84141342 56 53 3 1268 1 0.0262286
SE_02_11500088 chr20 50358229 50385847 73 92 3 1453 3 -0.00489255
SE_02_11500089 chr2 87921266 87941221 25 70 3 983 2 0.0200537
SE_02_11500090 chr19 12885245 12905724 66 119 5 1711 3 0.115541
SE_02_11500091 chr3 175389029 175410292 51 83 3 1224 3 0.0241502
SE_02_11500092 chr19 45573880 45629123 66 137 4 2179 8 0.0198773
SE_02_11500093 chr20 43342536 43376692 66 81 4 1340 3 0.0237938
SE_02_11500094 chr6 31762031 31805292 61 95 4 1456 7 0.0353871
SE_02_11500095 chr2 112066537 112087191 24 76 3 1045 2 0.0135285
SE_02_11500096 chr10 63658651 63705757 63 103 3 1859 6 0.149733
SE_02_11500097 chr5 55748799 55787934 61 118 3 1454 6 0.0694315
SE_02_11500098 chr5 57361092 57393062 67 100 4 1881 5 0.0483141
SE_02_11500099 chr2 11617166 11630686 60 64 4 1130 1 0.0126898
SE_02_11500100 chr1 235091722 235134677 66 91 4 1840 5 0.0406572
SE_02_11500101 chr3 15332345 15374995 71 103 3 1579 4 0.0470154
SE_02_11500102 chr1 150941936 150956384 77 64 4 1631 3 0.0447255
SE_02_11500103 chr6 33238679 33292136 67 125 4 2003 6 0.122192
SE_02_11500104 chr8 67424401 67455410 68 83 5 1767 5 0.0499964
SE_02_11500105 chr16 75062273 75102016 65 58 4 1436 5 0.0271811
SE_02_11500106 chr14 44230697 44266493 47 82 3 1289 4 0.0140267
SE_02_11500107 chr1 234734193 234750435 60 81 3 1242 1 0.218804
SE_02_11500108 chr17 61519137 61525922 59 64 3 1345 1 0.00691024
SE_02_11500109 chr19 47596599 47618425 64 85 3 1539 2 0.0692675
SE_02_11500110 chr8 128805890 128833846 79 95 4 2008 4 -0.0168589
SE_02_11500111 chr2 11635949 11649041 72 84 4 1776 1 0.0183816
SE_02_11500112 chr17 48938089 48947415 57 54 3 943 1 0.173105
SE_02_11500113 chr10 117464087 117472902 37 47 3 940 1 0.0567411
SE_02_11500114 chr1 149854457 149861635 63 39 3 954 1 0.14914
SE_02_11500115 chr5 55642090 55686065 60 77 4 1715 6 0.062472
SE_02_11500116 chr16 54096460 54141943 45 94 4 1114 7 0.130208
SE_02_11500117 chr6 30735651 30797215 64 97 5 1561 7 0.0161
SE_02_11500118 chr14 69253548 69283990 66 84 4 1643 3 0.106226
SE_02_11500119 chr19 18389427 18452447 69 137 5 2134 10 -0.00565006
SE_02_11500120 chr10 106230482 106260100 53 76 4 1503 4 0.0614483
SE_02_11500121 chr5 57475094 57487939 45 39 3 876 1 0.0526354
SE_02_11500122 chr8 144813626 144823892 59 81 4 1318 2 -0.00157459
SE_02_11500123 chr22 37574365 37596341 68 84 5 1924 3 0.0364086
SE_02_11500124 chr6 26268436 26297350 70 81 4 1838 3 -0.00121869
SE_02_11500125 chr14 28192864 28212541 36 45 3 786 2 0.0188395
SE_02_11500126 chr3 174842169 174870831 61 102 4 1315 4 0.0154813
SE_02_11500127 chr8 101960908 101967226 63 58 3 1011 1 0.117043
SE_02_11500128 chr12 12866621 12880200 53 61 4 1223 1 0.16206
SE_02_11500129 chr15 93178666 93211360 68 78 5 1334 4 0.0410365
SE_02_11500130 chr14 65692179 65726562 65 78 4 1325 4 0.0258678
SE_02_11500131 chr14 55567422 55598147 63 85 4 1538 3 0.00343606
SE_02_11500132 chr16 85469667 85508134 80 80 4 1798 4 -0.00275005
SE_02_11500133 chr8 128859419 128886282 82 96 4 1924 3 -0.0240789
SE_02_11500134 chr17 17714692 17745717 59 96 4 1839 3 0.062839
SE_02_11500135 chr5 22646025 22684223 40 65 3 1050 7 0.00479509
SE_02_11500136 chr17 79301394 79320948 70 57 5 1352 2 -0.0246849
SE_02_11500137 chr14 93473764 93513992 64 133 4 1957 5 -0.00202424
SE_02_11500138 chr3 129203087 129227617 59 61 3 1556 3 0.102912
SE_02_11500139 chr8 123791985 123801192 64 51 4 1252 1 0.148212
SE_02_11500140 chr8 117800078 117828395 50 62 3 864 3 0.0201182
SE_02_11500141 chr5 66499859 66514314 63 75 4 1272 2 0.0381754
SE_02_11500142 chr17 1900285 1946533 62 84 3 1442 7 0.0615987
SE_02_11500143 chr17 60554049 60559476 46 39 2 831 1 0.112251
SE_02_11500144 chr12 97948068 97967999 65 53 4 1363 2 0.0623621
SE_02_11500145 chr6 10402695 10421330 62 78 3 1104 3 0.20988
SE_02_11500146 chr17 38462176 38491473 71 113 5 1905 6 0.198845
SE_02_11500147 chr17 60855093 60898160 68 107 4 1356 5 0.0539074
SE_02_11500148 chr15 39871842 39892290 50 91 3 1492 1 0.163918
SE_02_11500149 chr17 64945770 64963048 76 59 4 1598 2 0.0268271
SE_02_11500150 chr14 74206258 74231818 71 72 4 1516 3 0.115465
SE_02_11500151 chr6 32934685 32942383 51 68 4 1287 1 0.100864
SE_02_11500152 chr12 52577042 52613667 77 114 5 1717 4 0.0396564
SE_02_11500153 chr8 69762368 69774739 63 42 4 1501 2 0.0517829
SE_02_11500154 chr15 99435912 99449386 49 61 4 1202 1 0.0784046
SE_02_11500155 chr9 94903020 94915965 66 44 3 1119 3 0.0354009
SE_02_11500156 chr15 88012782 88023474 42 64 3 1015 2 0.0113728
SE_02_11500157 chr8 116659795 116682380 55 64 5 1219 2 0.172634
SE_02_11500158 chr17 56080567 56101498 68 55 5 1370 2 0.110753
SE_02_11500159 chr19 42745772 42785947 65 119 6 2059 4 0.135116
SE_02_11500160 chr15 96430443 96457498 65 84 4 1388 3 0.0973817
SE_02_11500161 chr14 100522622 100565528 64 85 4 1592 7 0.0383418
SE_02_11500162 chr17 62208558 62239635 64 46 3 1262 3 0.0480214
SE_02_11500163 chr12 131702371 131732741 47 99 3 1529 7 -0.0244717
SE_02_11500164 chr1 115051361 115056104 67 32 3 973 1 0.0785485
SE_02_11500165 chr12 116821721 116845654 65 56 4 1526 2 0.0319911
SE_02_11500166 chr10 117412409 117433140 59 54 4 1247 3 0.0633099
SE_02_11500167 chr12 116703779 116719422 49 94 3 1164 2 0.111771
SE_02_11500168 chr17 61846802 61859096 70 42 3 1441 3 0.0277703
SE_02_11500169 chr12 46649011 46664342 60 51 3 1026 2 0.0770655
SE_02_11500170 chr17 62960806 62990652 74 78 5 1720 5 0.0275024
SE_02_11500171 chr20 62493769 62499054 67 41 5 1128 1 0.0178382
SE_02_11500172 chr20 61554495 61571704 54 53 4 1101 2 -0.0228052
SE_02_11500173 chr15 99190588 99199567 45 59 4 1342 2 0.0890653
SE_02_11500174 chr11 69452532 69460800 56 74 4 1383 1 0.132172
SE_02_11500175 chr14 24157968 24167141 57 40 4 923 1 0.0110558
SE_02_11500176 chr9 131928249 131941540 62 69 3 1656 3 0.120013
SE_02_11500177 chr7 73151631 73162403 60 81 4 1015 1 0.0109612
SE_02_11500178 chr17 55417103 55454267 66 104 4 1708 6 0.0797729
SE_02_11500179 chr17 61914206 61921263 70 48 4 1288 1 0.114292
SE_02_11500180 chr11 86483737 86516327 69 59 4 1427 3 0.0760292
SE_02_11500181 chr8 86847638 86879899 58 48 4 1784 4 0.0406512
SE_02_11500182 chr13 23552024 23603704 59 77 4 1424 8 0.0224619
SE_02_11500183 chr5 133841091 133864273 60 91 5 1512 3 0.0901658
SE_02_11500184 chr3 113250624 113277427 59 41 3 1086 3 0.0562427
SE_02_11500185 chr2 20646101 20675984 72 100 4 1564 4 0.0682163
SE_02_11500186 chr22 38785509 38797498 44 80 4 1119 1 0.0164784
SE_02_11500187 chr16 85025991 85046094 69 43 4 1302 3 -0.0322946
SE_02_11500188 chr6 64269997 64289141 60 72 3 1297 3 0.0733089
SE_02_11500189 chr16 68765306 68790321 71 61 4 1419 3 0.0203827
SE_02_11500190 chr16 21512276 21532340 67 87 4 1609 3 -0.0168444
SE_02_11500191 chr10 33557883 33596716 56 69 4 1419 4 0.0716096
SE_02_11500192 chr8 145015003 145032646 63 86 5 1408 3 0.00406622
SE_02_11500193 chr15 39912986 39936559 43 70 4 1202 4 0.0907608
SE_02_11500194 chr10 43889795 43916994 60 66 3 1482 3 0.00156035
SE_02_11500195 chr8 91648778 91662959 58 57 4 1208 2 0.0720628
SE_02_11500196 chr1 204375930 204389066 65 50 3 1232 2 0.078144
SE_02_11500197 chr1 85663391 85696609 60 69 4 1105 5 0.0777863
SE_02_11500198 chr19 39880471 39904871 71 106 4 1938 4 0.0792357
SE_02_11500199 chr8 103611111 103630589 70 59 4 1662 2 0.0348218
SE_02_11500200 chr1 186117332 186126073 53 28 4 1225 1 0.0929632
SE_02_11500201 chr8 101014822 101033670 46 66 3 996 2 0.0823723
SE_02_11500202 chr17 62499180 62505009 67 53 4 1363 1 0.0686839
SE_02_11500203 chr20 48758137 48784132 70 68 4 1186 3 0.015882
SE_02_11500204 chr7 104649686 104656667 63 67 4 1412 1 0.160909
SE_02_11500205 chr7 26235505 26244000 61 46 3 908 1 0.042623
SE_02_11500206 chrX 115360164 115374267 37 52 4 1024 2 0.0222136
SE_02_11500207 chr16 3053364 3074675 73 84 5 1742 3 0.039521
SE_02_11500208 chr1 33206749 33229352 56 73 4 1155 3 0.101926
SE_02_11500209 chr12 57471343 57489389 63 62 4 1335 4 0.135329
SE_02_11500210 chr15 50644314 50649122 65 26 4 1198 1 0.106663
SE_02_11500211 chr12 14919891 14931091 56 52 5 1287 2 0.0190037
SE_02_11500212 chr17 75264786 75286595 66 62 4 1506 2 -0.0100411
SE_02_11500213 chr19 13949251 13977280 64 101 3 1727 5 0.0325389
SE_02_11500214 chr19 40926371 40952595 64 75 4 1567 3 0.0528155
SE_02_11500215 chr17 61025378 61047250 80 86 5 1742 3 0.0572009
SE_02_11500216 chr1 17845502 17888920 70 89 4 1889 6 0.0257313
SE_02_11500217 chr17 43224198 43251459 65 101 4 1493 3 0.0817529
SE_02_11500218 chr3 149102181 149121774 57 62 4 1201 3 0.0485438
SE_02_11500219 chr17 39675580 39687810 52 61 4 1266 1 0.0564742
SE_02_11500220 chr10 104912223 104953162 61 80 3 1253 4 0.0367424
SE_02_11500221 chr4 143516043 143539056 56 61 3 1194 3 0.0293474
SE_02_11500222 chr3 174975797 174992950 50 51 4 1075 2 0.0291266
SE_02_11500223 chr17 72761803 72774903 64 84 4 1467 1 0.0795423
SE_02_11500224 chr8 102613411 102622799 59 51 4 1386 1 0.0469576
SE_02_11500225 chr10 134209402 134236171 59 88 4 1367 4 -0.0612672
SE_02_11500226 chr12 75261648 75268734 55 46 4 1065 1 NA
SE_02_11500227 chr12 64292312 64316442 50 58 4 1165 2 0.0207394
SE_02_11500228 chr16 88821175 88852392 76 84 4 1681 4 -0.0739057
SE_02_11500229 chr7 107978521 108009342 64 75 4 1294 5 0.0462903
SE_02_11500230 chr1 215255554 215291513 51 63 3 1215 3 0.0669235
SE_02_11500231 chr12 53613047 53627775 62 70 5 1144 4 0.170144
SE_02_11500232 chr8 95650238 95670902 67 65 4 1624 2 0.0481778
SE_02_11500233 chr2 212270240 212301258 53 49 3 1082 4 0.0633205
SE_02_11500234 chr8 118235685 118250366 34 54 3 873 2 0.0767769
SE_02_11500235 chr21 43782058 43798598 78 81 4 1525 2 -0.067853

Master TFs Network

CRC model in Sample_02_115