General Details

Sample Id:Sample_02_065
Genome:Homo sapiens-hg19
Series: GSE61176
Biosample Type:Cell line
Tissue Type:Embryo
Sample Name:KO2-Late_G1
PMID: -|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_06500001 chr15 99188465 99368380 0 251 6 1881 34 0.0567542
SE_02_06500002 chr10 88514288 88634317 0 137 3 1072 17 0.0371208
SE_02_06500003 chr3 61641474 61726938 0 160 3 1314 11 0.0478375
SE_02_06500004 chr21 27441671 27542478 0 155 4 919 13 0.03857
SE_02_06500005 chr6 15239234 15364032 0 183 4 1324 21 0.0181697
SE_02_06500006 chr4 93353264 93451183 0 134 6 917 18 -0.00493553
SE_02_06500007 chr10 18840718 18862294 0 14 0 55 1 0.00916095
SE_02_06500008 chr2 112170980 112237051 0 148 3 1315 7 0.0520509
SE_02_06500009 chr1 39596615 39697529 0 169 3 1210 17 0.0810982
SE_02_06500010 chr5 171337713 171437680 0 136 3 1278 15 0.0776553
SE_02_06500011 chr17 44177543 44272899 0 146 0 1079 16 0.0361202
SE_02_06500012 chr1 64936481 65012812 0 145 2 935 10 0.0832406
SE_02_06500013 chr1 164526337 164641417 0 162 2 1272 17 0.118315
SE_02_06500014 chrX 139791066 139809135 0 39 2 309 3 0.0112359
SE_02_06500015 chr13 100332708 100402977 0 133 2 710 9 0.073814
SE_02_06500016 chr8 30279947 30360642 0 135 0 746 15 0.040759
SE_02_06500017 chr3 32854870 32919016 0 184 2 1410 12 0.025469
SE_02_06500018 chr6 138805005 138893445 0 113 4 1066 10 0.075133
SE_02_06500019 chr3 61813743 61889375 0 85 0 626 10 0.0438116
SE_02_06500020 chr8 128806656 128840629 0 126 2 1151 6 -0.00918215
SE_02_06500021 chr18 60407789 60468417 0 91 1 669 8 0.0890569
SE_02_06500022 chr8 128856786 128933006 0 145 2 1468 11 -0.0204214
SE_02_06500023 chr1 200330553 200383310 0 101 2 727 8 0.106211