General Details

Sample Id:Sample_02_061
Genome:Homo sapiens-hg19
Series: GSE59703
Biosample Type:Cell line
Tissue Type:Adipose
Sample Name:hMADS-3_white
PMID: 25504365|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_06100001 chr11 65243819 65274968 3 101 4 784 10 0.0433172
SE_02_06100002 chr7 80262611 80288824 4 39 3 496 6 0.0285832
SE_02_06100003 chr11 111689341 111718694 4 51 0 720 12 0.087419
SE_02_06100004 chr11 65184044 65196112 3 82 2 548 3 0.024436
SE_02_06100005 chr8 82392049 82409748 4 35 2 273 7 0.0507372
SE_02_06100006 chr1 145258666 145265167 3 15 0 230 1 0.122526
SE_02_06100007 chr1 120556855 120562737 2 20 0 244 1 0.184335
SE_02_06100008 chr12 109568288 109586902 4 53 0 345 6 0.0153968
SE_02_06100009 chr2 189834340 189848911 3 41 0 436 6 0.0944696
SE_02_06100010 chr2 145270524 145288473 3 51 0 275 7 0.270398
SE_02_06100011 chr7 80159222 80181624 4 22 1 577 7 0.0221601
SE_02_06100012 chr7 64457835 64466801 4 48 0 572 3 0.00991463
SE_02_06100013 chr13 111262223 111262582 0 12 1 51 1 0.027744
SE_02_06100014 chr7 64481398 64502010 3 43 0 530 6 0.0179772
SE_02_06100015 chr4 185780626 185819530 4 44 1 678 6 -0.01805
SE_02_06100016 chr6 111911581 111927586 3 42 1 366 4 0.0733218
SE_02_06100017 chr3 12389179 12396984 4 23 0 242 3 0.099111
SE_02_06100018 chr1 7395079 7395354 0 13 1 74 1 -0.0255129
SE_02_06100019 chr8 59507676 59532023 4 23 1 385 5 0.0543315
SE_02_06100020 chr7 65322336 65340485 3 40 0 290 5 0.00737111
SE_02_06100021 chr8 62623757 62634624 4 25 1 239 3 0.0539376
SE_02_06100022 chr1 209843451 209850906 3 31 0 282 4 0.0770713
SE_02_06100023 chr9 101670542 101683613 3 21 0 261 4 0.0682344
SE_02_06100024 chr22 46452078 46475354 3 35 2 236 5 0.0780445
SE_02_06100025 chr2 55324426 55347629 4 35 1 296 5 0.0589599
SE_02_06100026 chr4 39408717 39418919 3 33 0 222 6 0.0577605
SE_02_06100027 chr12 72662639 72677033 4 29 1 433 4 0.132119
SE_02_06100028 chr10 102094005 102111031 4 31 1 291 3 0.056628
SE_02_06100029 chr5 151062927 151079516 3 34 0 249 4 0.0620735
SE_02_06100030 chr10 113969943 113976091 3 25 1 209 2 0.0146945
SE_02_06100031 chr15 90219866 90230719 4 33 0 359 4 0.0831208
SE_02_06100032 chr1 234740989 234754374 4 33 0 449 5 0.203765
SE_02_06100033 chr2 33141182 33141798 1 25 1 173 1 NA
SE_02_06100034 chr9 19142088 19184764 4 31 0 410 7 0.0065208
SE_02_06100035 chr20 45982443 45990111 4 47 1 464 2 0.220819
SE_02_06100036 chr12 54411929 54425441 3 41 1 254 5 0.256229
SE_02_06100037 chr8 19519446 19519607 0 12 1 66 1 -0.159731
SE_02_06100038 chr19 33773266 33792313 3 39 0 303 6 0.0528911
SE_02_06100039 chr17 29886630 29896622 3 53 2 513 5 0.0926996
SE_02_06100040 chr11 61732128 61740333 4 40 1 380 5 0.0537986
SE_02_06100041 chr9 22648773 22658685 4 17 0 200 3 0.0776399
SE_02_06100042 chr8 82251015 82267164 3 22 0 167 3 0.0539505
SE_02_06100043 chr3 81792207 81810705 3 35 0 343 3 0.0249345
SE_02_06100044 chr21 36207323 36217835 4 18 0 266 3 0.0429445
SE_02_06100045 chr7 8244771 8254921 3 31 0 231 8 0.106347
SE_02_06100046 chr16 77307149 77311460 3 20 0 202 3 0.0204263
SE_02_06100047 chr2 74934556 74943284 3 22 0 366 4 0.071267
SE_02_06100048 chr12 45597812 45613182 4 28 1 309 3 0.0373876
SE_02_06100049 chr17 57915497 57925544 2 21 0 87 3 0.0987669
SE_02_06100050 chr14 53329875 53352983 3 22 2 325 6 0.0364182
SE_02_06100051 chr5 142772371 142781595 2 10 0 112 7 0.156892
SE_02_06100052 chr5 56701055 56708802 3 14 0 120 4 0.0647377
SE_02_06100053 chr8 74223256 74234286 4 4 1 157 2 0.143861
SE_02_06100054 chr12 110980725 111013375 3 18 1 150 5 0.0686434
SE_02_06100055 chrX 44141743 44142023 0 15 1 58 1 -0.0213119
SE_02_06100056 chr11 63255614 63262679 3 14 1 220 2 0.0200865
SE_02_06100057 chr5 150159540 150170039 4 19 0 229 3 0.0663294
SE_02_06100058 chr6 163813130 163837980 3 23 1 169 4 0.062361
SE_02_06100059 chr9 19120203 19125785 0 18 1 245 3 0.0535598
SE_02_06100060 chr3 186557203 186565243 3 21 0 137 3 0.0278714
SE_02_06100061 chr14 99887171 99887444 0 15 1 77 1 -0.0485754
SE_02_06100062 chr2 227055076 227080253 3 19 0 195 7 0.0378238
SE_02_06100063 chr7 128087633 128095694 3 29 1 187 3 0.0257236
SE_02_06100064 chr14 69508597 69517840 4 21 0 208 3 0.0743928
SE_02_06100065 chr12 89740968 89745525 1 26 1 141 3 0.263931
SE_02_06100066 chr2 192810149 192817303 3 24 0 177 5 0.106135
SE_02_06100067 chr2 109169218 109190673 4 20 0 270 4 0.0351119
SE_02_06100068 chr3 123351935 123373425 4 24 1 409 3 0.0537648
SE_02_06100069 chr12 39973755 39993736 4 18 1 231 5 0.0478625
SE_02_06100070 chr5 42222020 42244162 3 6 0 82 3 0.0198356
SE_02_06100071 chr1 51436540 51446108 0 11 1 21 4 0.207579
SE_02_06100072 chr9 684061 694798 4 13 0 197 2 0.0835846
SE_02_06100073 chr4 190988664 190988937 0 19 1 73 1 -0.0230294
SE_02_06100074 chr6 100620709 100628248 3 15 0 193 6 0.081187
SE_02_06100075 chr12 57527763 57544029 3 34 2 215 5 0.123835
SE_02_06100076 chr6 32936306 32939656 3 54 0 391 1 0.142463
SE_02_06100077 chr9 94179924 94191773 2 5 0 64 3 0.122836
SE_02_06100078 chr3 49240369 49277215 3 26 1 139 5 0.0207618
SE_02_06100079 chr1 87167020 87172712 4 12 0 194 2 0.0651988
SE_02_06100080 chr12 89602315 89612543 3 11 0 53 2 0.0742336
SE_02_06100081 chr10 63809010 63819785 3 14 0 123 4 0.228221
SE_02_06100082 chr11 14559457 14564215 3 20 1 123 3 0.163166
SE_02_06100083 chr15 52312009 52314218 3 10 0 60 1 0.192732
SE_02_06100084 chr4 185742323 185746600 2 13 0 76 3 0.0474828
SE_02_06100085 chr4 185722632 185728294 3 16 1 170 4 0.0426584
SE_02_06100086 chr7 115946455 115971933 4 10 1 244 4 0.067609
SE_02_06100087 chr1 109921811 109936171 3 18 1 367 3 0.0956601
SE_02_06100088 chr7 113339906 113345686 2 18 0 193 2 0.027371
SE_02_06100089 chr6 53325099 53330555 4 7 0 230 3 0.0172843
SE_02_06100090 chr18 71949335 71956165 3 16 0 144 3 -0.0221428
SE_02_06100091 chr8 13302095 13317001 3 10 0 106 3 0.0119214
SE_02_06100092 chr1 209816378 209823212 3 24 1 198 3 0.0725918
SE_02_06100093 chr5 96189883 96193645 4 19 0 217 3 0.0382507
SE_02_06100094 chr9 73026408 73035782 3 38 1 295 4 0.218706
SE_02_06100095 chr3 15647498 15652571 3 3 0 63 3 0.0502026
SE_02_06100096 chr2 62924783 62930889 4 6 1 191 2 0.130121
SE_02_06100097 chr10 63842345 63856315 3 5 0 101 3 0.238836
SE_02_06100098 chr15 78738385 78754178 3 8 0 178 3 0.0407945
SE_02_06100099 chr17 21064804 21071813 4 11 0 214 2 0.0672856
SE_02_06100100 chr8 13215140 13225849 4 4 0 149 3 0.0312027
SE_02_06100101 chr2 39350993 39368031 4 36 0 370 3 0.0757676
SE_02_06100102 chr19 42915391 42926940 3 14 0 212 3 0.0441375
SE_02_06100103 chr18 71915914 71920144 4 10 0 166 3 -0.0507139
SE_02_06100104 chr17 7739137 7746542 3 63 2 516 2 0.156346
SE_02_06100105 chr1 160326215 160333780 3 35 1 340 5 0.110754
SE_02_06100106 chr12 109116320 109123983 3 14 0 147 3 0.133379
SE_02_06100107 chr5 158477081 158484189 2 7 0 53 3 0.184339
SE_02_06100108 chr12 50633837 50636907 4 11 0 195 3 0.132659
SE_02_06100109 chr10 97167760 97182958 3 12 0 103 3 0.126374
SE_02_06100110 chr10 4984144 4990968 4 13 1 167 3 -0.0558464
SE_02_06100111 chr1 155949968 155953671 4 25 0 298 2 0.185916
SE_02_06100112 chr12 109549055 109554782 4 19 1 258 2 0.0160807
SE_02_06100113 chr5 73155993 73159048 3 10 0 70 2 0.0255404
SE_02_06100114 chr15 55694365 55696845 3 7 0 166 1 0.0705274
SE_02_06100115 chr3 12330538 12334153 3 7 0 42 1 0.112189
SE_02_06100116 chr1 145113579 145115359 1 2 0 22 1 0.110549
SE_02_06100117 chr3 143244512 143258046 4 6 0 159 5 0.0904245
SE_02_06100118 chr2 226982757 226986918 4 11 0 244 4 0.102776
SE_02_06100119 chr7 104652365 104654489 3 36 1 547 1 0.193804
SE_02_06100120 chr2 75062274 75072776 3 29 0 290 3 0.0850348
SE_02_06100121 chr6 128960096 128964158 4 19 0 299 2 0.070678
SE_02_06100122 chr2 1733055 1736015 4 26 0 310 1 -0.100421
SE_02_06100123 chr7 5464686 5469861 3 39 1 363 3 0.10384
SE_02_06100124 chr6 7162397 7170312 3 11 1 255 5 0.075558
SE_02_06100125 chr1 8446649 8469686 3 8 2 85 4 0.00697279
SE_02_06100126 chr4 123705026 123720212 4 16 0 396 3 0.0450096
SE_02_06100127 chr2 178669788 178674860 4 7 0 156 4 0.0871307
SE_02_06100128 chr10 114020354 114025656 4 8 0 293 3 0.0370807
SE_02_06100129 chr4 38770703 38777249 2 4 0 37 3 0.104115
SE_02_06100130 chr1 51474973 51486790 4 4 1 151 3 0.0664905
SE_02_06100131 chr12 123185377 123199970 3 11 0 74 2 0.0402907
SE_02_06100132 chr17 46619361 46625709 3 34 1 263 2 0.247652
SE_02_06100133 chr20 24965129 24969869 2 15 0 77 2 -0.00192931
SE_02_06100134 chr2 192987940 192993496 2 3 0 36 4 0.11269
SE_02_06100135 chr12 50614024 50616648 4 12 0 204 1 0.290335
SE_02_06100136 chr1 167326247 167326629 0 15 1 87 1 0.0113573
SE_02_06100137 chr2 238186837 238200254 4 12 0 210 3 -0.0143485
SE_02_06100138 chr15 59216809 59225332 2 8 0 167 2 0.0781442
SE_02_06100139 chr6 30582820 30585156 3 12 1 94 1 0.361748
SE_02_06100140 chr6 53301695 53305495 2 6 0 52 2 0.0644426
SE_02_06100141 chr19 41328614 41340290 2 9 1 68 3 -0.00237045
SE_02_06100142 chr15 26144947 26149091 4 24 0 277 3 -0.093613
SE_02_06100143 chr1 100126849 100139106 4 6 1 156 5 0.0718743
SE_02_06100144 chr1 226000514 226006151 3 30 1 302 3 0.0232165
SE_02_06100145 chr12 56689766 56694028 3 33 0 200 3 0.0933903
SE_02_06100146 chr5 158123108 158129268 3 9 0 48 3 0.242379
SE_02_06100147 chr1 212428389 212430705 3 14 0 93 1 0.120538
SE_02_06100148 chr10 5112565 5115344 4 13 0 192 2 -0.0414035
SE_02_06100149 chr6 112542563 112545567 4 6 1 156 3 0.120905
SE_02_06100150 chr2 174877823 174890191 3 11 0 116 2 0.0782282
SE_02_06100151 chr17 38705498 38708574 3 20 1 251 3 0.0535401
SE_02_06100152 chr3 12493908 12504361 4 14 0 239 4 0.0604942
SE_02_06100153 chr12 14225042 14227523 4 4 0 152 2 0.10186
SE_02_06100154 chr11 130440790 130453951 4 18 0 211 3 0.0517718
SE_02_06100155 chr21 30056401 30072181 3 12 0 268 3 0.045677
SE_02_06100156 chr5 150575358 150594800 4 17 0 258 3 0.0229881

Master TFs Network

CRC model in Sample_02_061