General Details

Sample Id:Sample_02_029
Genome:Homo sapiens-hg19
Series: GSE49320
Biosample Type:Cell line
Tissue Type:Colorectal
Sample Name:LS174T
PMID: 24952462|
Data Source:NCBI GEO/SRA

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_02_02900001 chr1 1057105 1101822 4 56 0 529 12 -0.0951507
SE_02_02900002 chr7 130578697 130607944 4 129 2 1103 8 0.0373853
SE_02_02900003 chr15 81130946 81154043 4 131 1 1068 7 0.00150554
SE_02_02900004 chr1 235090238 235112354 4 92 1 557 5 0.0631763
SE_02_02900005 chr1 207115454 207147945 2 104 2 702 6 0.0381974
SE_02_02900006 chr22 46451606 46481761 4 80 0 682 9 0.0821416
SE_02_02900007 chr3 58632030 58659140 1 65 0 414 5 0.0179498
SE_02_02900008 chr17 56440561 56466633 4 77 0 619 5 0.105501
SE_02_02900009 chr1 234949259 234960203 3 84 2 599 2 0.0196384
SE_02_02900010 chr8 128257307 128289684 3 88 1 656 7 0.0108589
SE_02_02900011 chr22 23860418 23880128 2 62 1 458 7 -0.0530243
SE_02_02900012 chr15 40637027 40660185 2 39 1 375 4 0.0822863
SE_02_02900013 chr2 110807831 110829775 1 99 1 643 4 -0.00138913
SE_02_02900014 chr2 111056732 111078772 1 96 1 640 6 -0.00213704
SE_02_02900015 chr17 70402562 70427513 4 50 0 412 6 0.0459031
SE_02_02900016 chr2 119591671 119612837 2 41 2 560 4 0.114219
SE_02_02900017 chr2 200320517 200335030 3 48 1 310 5 0.139123
SE_02_02900018 chr1 226297798 226324012 3 42 0 380 4 0.00359351
SE_02_02900019 chr1 17088351 17095484 1 47 1 373 1 NA
SE_02_02900020 chr1 234734465 234748431 4 54 1 438 3 0.224336
SE_02_02900021 chr11 2223845 2236730 4 36 1 603 6 -0.0278466
SE_02_02900022 chr7 5458414 5469965 4 58 1 448 4 0.127376
SE_02_02900023 chr11 34644899 34663812 2 72 1 441 6 0.0547747
SE_02_02900024 chr2 232527199 232546623 2 38 1 416 6 -0.0301062
SE_02_02900025 chr1 169070292 169079817 2 87 1 606 1 0.104575
SE_02_02900026 chr1 168658516 168679541 1 64 0 535 4 0.0471889
SE_02_02900027 chr21 40159567 40180611 2 46 1 248 4 0.00288443
SE_02_02900028 chr15 90577418 90606646 4 25 1 258 4 0.020949
SE_02_02900029 chr21 40281662 40293786 2 74 0 727 6 -0.00448885
SE_02_02900030 chr21 40323069 40332553 2 72 1 786 2 -0.0187526
SE_02_02900031 chr16 1131502 1150154 3 23 0 344 4 -0.0711187
SE_02_02900032 chr14 105143722 105162026 2 30 0 457 4 -0.019608
SE_02_02900033 chr19 13123488 13137294 2 70 2 572 4 0.248499
SE_02_02900034 chr14 69247120 69263281 3 31 1 431 2 0.142795
SE_02_02900035 chr14 100607882 100622202 4 37 0 426 3 -0.0165228
SE_02_02900036 chr7 953890 967182 4 27 0 235 6 -0.0754913
SE_02_02900037 chr1 168907248 168931106 2 89 0 355 4 0.0401128
SE_02_02900038 chr1 154972223 154980964 3 33 1 316 3 0.253816
SE_02_02900039 chr1 225628232 225636735 3 48 0 299 3 0.0130816
SE_02_02900040 chr1 226062696 226071218 2 18 0 194 2 0.0314936
SE_02_02900041 chr21 38072724 38092033 4 16 0 354 5 0.0183588
SE_02_02900042 chr19 13949460 13962739 4 30 1 284 5 0.0600931
SE_02_02900043 chr14 38052506 38068562 2 29 0 365 4 0.148368
SE_02_02900044 chr2 173193501 173208095 2 33 0 140 4 0.0595316
SE_02_02900045 chr7 130678384 130693249 3 77 2 531 4 0.0405358
SE_02_02900046 chr11 65243760 65260981 1 49 1 388 3 0.00420943
SE_02_02900047 chr19 1745041 1755991 2 31 0 257 4 0.0107687
SE_02_02900048 chr18 3593331 3606526 3 61 1 683 2 0.0703103
SE_02_02900049 chr20 62032971 62043562 2 13 1 282 5 -0.0338041
SE_02_02900050 chr1 202003415 202026616 2 22 0 340 3 0.0279542
SE_02_02900051 chr9 132244943 132259015 3 22 0 266 4 0.02192
SE_02_02900052 chr15 59827324 59837571 2 26 0 210 2 -0.0470855
SE_02_02900053 chr17 17584617 17598225 2 17 1 222 2 0.0902468
SE_02_02900054 chr19 13262742 13276264 3 38 0 405 2 0.0238091
SE_02_02900055 chr2 219260919 219272173 3 15 0 226 2 0.0730587
SE_02_02900056 chr8 128575870 128583919 3 50 1 456 5 -0.0141477
SE_02_02900057 chr1 23879963 23886039 1 26 0 152 3 0.116201
SE_02_02900058 chr10 102819894 102827776 2 16 0 205 2 0.124068
SE_02_02900059 chr2 8816489 8825998 2 44 1 299 3 0.168371
SE_02_02900060 chr1 229299966 229309776 1 31 0 360 3 -0.0282986
SE_02_02900061 chr3 110371564 110386352 2 44 0 351 4 0.04757
SE_02_02900062 chr1 228558808 228567787 2 20 0 269 3 0.021524
SE_02_02900063 chr6 10404792 10418250 2 11 0 117 2 0.224961
SE_02_02900064 chr1 156716505 156721535 2 21 0 252 2 0.165591
SE_02_02900065 chr1 16968765 16972169 2 10 0 73 1 NA
SE_02_02900066 chr16 2202725 2214140 2 14 1 167 2 -0.0273126
SE_02_02900067 chr8 128224681 128233875 2 54 0 519 3 0.0428939
SE_02_02900068 chr14 35015098 35026400 0 5 0 5 2 -0.0519474
SE_02_02900069 chr1 229264575 229268413 4 13 0 231 1 -0.0108845
SE_02_02900070 chr6 32935664 32939505 2 24 1 173 1 0.0989272
SE_02_02900071 chr20 62165582 62174415 1 18 0 109 2 -0.0565055
SE_02_02900072 chr15 69108951 69113318 1 32 1 287 1 0.234263
SE_02_02900073 chr19 4058517 4065340 2 30 0 162 4 0.0483161
SE_02_02900074 chr17 4379446 4386983 3 13 0 151 3 -0.00407191
SE_02_02900075 chr10 63781678 63797557 1 48 0 217 2 0.117124
SE_02_02900076 chr1 149830300 149835087 0 29 1 169 1 0.0442058
SE_02_02900077 chr2 234597069 234608950 1 21 0 327 2 0.0350047
SE_02_02900078 chr19 1251143 1262460 1 14 0 152 2 0.0641659
SE_02_02900079 chr17 79360661 79371725 2 28 0 309 3 0.0448356
SE_02_02900080 chr3 49725971 49729438 1 6 0 70 1 0.175671
SE_02_02900081 chr1 149802359 149806645 0 28 1 167 1 0.0375625
SE_02_02900082 chr11 72491581 72499425 1 21 1 167 4 0.137492
SE_02_02900083 chr7 73241558 73246760 3 20 0 122 2 0.0618234
SE_02_02900084 chr17 16189443 16201696 4 30 0 552 2 0.00660052
SE_02_02900085 chr1 230885771 230889895 2 20 0 306 2 -0.0451068
SE_02_02900086 chr10 129679022 129688672 1 29 0 235 3 -0.0441103
SE_02_02900087 chr1 149810238 149812412 0 15 0 92 1 0.0251461
SE_02_02900088 chr13 27535895 27543125 2 24 0 197 2 -0.0309042
SE_02_02900089 chr22 29419237 29428402 3 18 0 136 2 0.136867
SE_02_02900090 chr7 155743994 155755247 2 31 0 204 2 -0.088501
SE_02_02900091 chr1 149824533 149826617 0 12 0 74 1 0.0668803
SE_02_02900092 chr11 65185187 65189781 2 73 2 624 3 -0.0183129
SE_02_02900093 chr7 1495258 1502249 2 19 0 280 2 -0.0199018
SE_02_02900094 chr1 234857360 234862554 3 33 0 383 2 0.180441
SE_02_02900095 chr12 71553340 71558997 2 42 0 331 3 0.0999067
SE_02_02900096 chr17 77897966 77906582 4 15 0 274 3 -0.0646013
SE_02_02900097 chr9 132358866 132371787 3 11 0 109 3 0.0184862
SE_02_02900098 chr12 52540211 52543665 2 8 0 108 2 0.0217017
SE_02_02900099 chr3 184274325 184279199 4 32 0 283 3 0.0898733
SE_02_02900100 chr17 77962137 77968270 4 33 2 236 2 -0.0560859
SE_02_02900101 chr2 232476766 232480552 2 24 0 316 2 0.0406491
SE_02_02900102 chr4 187854281 187864756 1 49 2 454 3 -0.0155969
SE_02_02900103 chr7 27194714 27199351 1 16 0 137 1 0.155899
SE_02_02900104 chr22 46402403 46410217 1 15 0 153 2 0.0405098
SE_02_02900105 chr19 10140275 10149181 2 10 0 42 2 0.00918926
SE_02_02900106 chr4 187644108 187648286 2 61 1 291 1 0.0385306
SE_02_02900107 chr17 1011275 1015509 2 16 0 264 1 0.0435071
SE_02_02900108 chr9 25989990 25996727 0 8 0 57 3 NA
SE_02_02900109 chr17 63366997 63372517 2 36 1 370 2 0.00336245
SE_02_02900110 chr1 202053545 202056338 3 15 1 133 1 0.0957124

Master TFs Network

CRC model in Sample_02_029