General Details

Sample Id:Sample_01_060
Genome:Homo sapiens-hg19
Series: NA GSE96313
Biosample Type:In vitro differentiated cells
Tissue Type:Embryo
Sample Name:radial-glial-cell
PMID: 22955616|
Data Source:ENCODE

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_01_06000001 chr17 75431401 75477434 0 103 4 724 6 -0.0275408
SE_01_06000002 chr20 31043429 31073466 0 88 0 573 4 0.0500836
SE_01_06000003 chr7 2533754 2565508 0 68 1 495 4 -0.00593429
SE_01_06000004 chr17 17585082 17629596 0 97 0 946 6 0.0728284
SE_01_06000005 chr5 751698 786380 0 55 0 281 4 -0.112451
SE_01_06000006 chr2 241614414 241639838 0 23 0 297 4 -0.0612684
SE_01_06000007 chr17 17655692 17688087 0 77 1 367 3 0.052247
SE_01_06000008 chr7 5458037 5470180 0 97 2 491 3 0.122344
SE_01_06000009 chr2 45155491 45177530 0 97 1 566 4 0.163676
SE_01_06000010 chr19 1250823 1269147 0 46 0 382 3 0.0369951
SE_01_06000011 chr3 181427499 181448282 0 176 4 916 4 0.249823
SE_01_06000012 chr7 1575464 1599828 0 20 1 72 3 -0.064539
SE_01_06000013 chr11 65243702 65259456 0 70 0 582 3 -0.00133016
SE_01_06000014 chr16 30203201 30219284 0 42 0 276 2 0.0121253
SE_01_06000015 chr9 132243843 132263587 0 77 1 468 4 0.0234682
SE_01_06000016 chr19 2040917 2062935 0 36 1 163 4 -0.0305717
SE_01_06000017 chr12 124984572 125004646 0 41 1 156 3 0.0103608
SE_01_06000018 chr1 145206550 145213902 0 145 3 527 1 0.115295
SE_01_06000019 chr14 99987784 100013271 0 84 0 536 4 -0.0359996
SE_01_06000020 chr19 18389604 18416580 0 61 1 471 3 0.0101725
SE_01_06000021 chr20 60929735 60953591 0 18 1 201 3 -0.0400079
SE_01_06000022 chr1 16159829 16177541 0 88 2 333 2 0.0139417
SE_01_06000023 chr1 120607520 120614847 0 149 3 608 1 0.0944121
SE_01_06000024 chr1 27887855 27902393 0 74 0 421 3 0.20592
SE_01_06000025 chr9 126762542 126781918 0 87 4 410 4 0.223451
SE_01_06000026 chr17 2296208 2305899 0 98 0 229 2 0.128687
SE_01_06000027 chr1 205409390 205426079 0 87 3 499 4 0.137172
SE_01_06000028 chr12 122013365 122020858 0 95 1 399 1 0.181019
SE_01_06000029 chr17 76347432 76363419 0 80 2 767 3 0.0786178
SE_01_06000030 chr20 45979605 45990379 0 120 0 515 2 0.251784
SE_01_06000031 chr1 16471544 16483542 0 54 0 688 2 0.114898
SE_01_06000032 chr12 57479511 57496755 0 39 0 266 4 0.166773
SE_01_06000033 chr13 100610902 100637780 0 108 0 855 4 0.211704
SE_01_06000034 chr1 157971049 157990552 0 86 1 659 3 0.108214
SE_01_06000035 chr15 96883604 96905810 0 116 2 670 4 0.179963
SE_01_06000036 chr11 1985946 2004721 0 32 0 325 3 -0.0210897
SE_01_06000037 chr7 104650739 104656672 0 79 3 505 2 0.19105
SE_01_06000038 chr1 16968432 16972391 0 23 0 62 1 NA
SE_01_06000039 chr6 33384726 33400395 0 49 1 354 4 0.18643
SE_01_06000040 chr17 46071297 46102219 0 91 1 555 4 0.0667751
SE_01_06000041 chr6 31997922 32013554 0 17 0 100 2 0.100214
SE_01_06000042 chr19 47612540 47617909 0 72 2 580 1 0.209354
SE_01_06000043 chr9 127023295 127045757 0 74 1 417 4 0.0250567
SE_01_06000044 chr1 17230071 17254279 0 67 2 445 4 -0.00573595
SE_01_06000045 chr9 98256262 98275077 0 76 1 542 3 0.150802
SE_01_06000046 chr4 1767022 1781474 0 56 0 493 4 -0.0285088
SE_01_06000047 chr9 138884154 138907900 0 37 2 245 4 -0.0283634
SE_01_06000048 chr3 49725812 49729726 0 14 0 57 1 0.164748
SE_01_06000049 chr6 31965185 31979515 0 16 0 100 2 0.0385934
SE_01_06000050 chr22 19861348 19870933 0 30 0 280 2 -0.0121031
SE_01_06000051 chr17 55992906 56014432 0 41 0 151 3 0.0795883
SE_01_06000052 chr2 121491912 121500537 0 154 3 587 2 0.166495
SE_01_06000053 chr19 18526761 18541118 0 32 1 219 3 0.00187147
SE_01_06000054 chr5 844153 851164 0 15 0 104 1 -0.126056
SE_01_06000055 chr19 13262700 13276328 0 62 0 477 2 0.0231812
SE_01_06000056 chr2 232570595 232580650 0 28 0 120 2 0.0566278
SE_01_06000057 chr2 232468260 232486608 0 46 1 371 4 0.0284382
SE_01_06000058 chr19 13953486 13962770 0 55 0 324 3 0.0419534
SE_01_06000059 chr14 35014729 35026785 0 30 2 158 2 -0.0510587
SE_01_06000060 chr7 121943488 121957530 0 90 1 834 3 0.0855221
SE_01_06000061 chr6 30848162 30855355 0 50 1 327 2 0.117189
SE_01_06000062 chr12 46659628 46664252 0 36 1 169 1 0.113238
SE_01_06000063 chr22 50730940 50746080 0 19 1 195 2 -0.021131
SE_01_06000064 chr6 32155794 32165791 0 29 0 241 2 0.168568
SE_01_06000065 chr7 76122842 76142241 0 27 0 262 3 -0.0224297
SE_01_06000066 chr11 62312118 62321576 0 53 0 408 2 0.0967
SE_01_06000067 chr1 27918307 27931102 0 58 1 263 2 0.193974
SE_01_06000068 chr9 139481233 139495161 0 41 0 316 3 -0.044176
SE_01_06000069 chr7 42266675 42279054 0 54 1 298 2 0.219286
SE_01_06000070 chr7 76620959 76636172 0 27 0 159 2 0.000684401
SE_01_06000071 chr1 3016062 3023856 0 35 1 290 2 -0.0667558
SE_01_06000072 chr10 119300975 119312715 0 92 1 476 3 0.212623
SE_01_06000073 chr22 41839596 41844806 0 35 0 213 1 0.0899126
SE_01_06000074 chr2 63271749 63280657 0 61 2 440 2 0.240477
SE_01_06000075 chr15 93604191 93616439 0 45 1 251 2 0.0659218
SE_01_06000076 chr9 132318518 132331989 0 33 0 208 2 -0.0152612
SE_01_06000077 chr16 75277941 75291626 0 41 0 295 3 0.0200788
SE_01_06000078 chr7 2671725 2681985 0 22 0 135 3 -0.0353301
SE_01_06000079 chr14 69257539 69263583 0 64 2 562 1 0.129493
SE_01_06000080 chr19 1859297 1877013 0 24 1 178 3 -0.0339256
SE_01_06000081 chr1 2244784 2255317 0 31 0 285 3 -0.0787545
SE_01_06000082 chr16 4364513 4378786 0 31 0 253 3 0.057913
SE_01_06000083 chr17 79366216 79376102 0 102 3 549 3 0.121376
SE_01_06000084 chr15 93352496 93376192 0 93 1 677 3 0.0389284
SE_01_06000085 chr2 202896338 202902494 0 94 2 449 2 0.228064
SE_01_06000086 chr12 7033577 7048433 0 32 1 334 2 0.126127
SE_01_06000087 chr16 15234261 15241440 0 27 1 330 1 0.021434
SE_01_06000088 chr1 3162941 3181812 0 128 1 451 3 -0.0451276
SE_01_06000089 chr17 47071780 47077713 0 84 4 556 1 0.226995
SE_01_06000090 chr6 32935413 32941332 0 44 1 280 1 0.118104
SE_01_06000091 chr19 56158472 56167982 0 42 2 343 2 0.0295508
SE_01_06000092 chr16 3069906 3074883 0 48 0 384 1 0.169519
SE_01_06000093 chr20 30299438 30312261 0 120 2 744 2 0.17471
SE_01_06000094 chr5 671446 680860 0 40 1 192 2 -0.141534
SE_01_06000095 chr15 70387403 70393944 0 71 2 379 2 0.205804
SE_01_06000096 chr4 154708641 154714834 0 63 2 466 2 0.036875
SE_01_06000097 chr1 155656147 155660038 0 36 3 163 1 0.0552874
SE_01_06000098 chr1 86041919 86049798 0 68 2 234 2 0.193647
SE_01_06000099 chr22 39569456 39576343 0 45 2 354 2 0.00619129
SE_01_06000100 chr12 54744679 54754740 0 60 1 362 2 0.180357
SE_01_06000101 chr1 2136617 2146693 0 34 0 492 2 -0.040128
SE_01_06000102 chr16 2171220 2177680 0 31 1 429 1 -0.113209
SE_01_06000103 chr10 21783054 21787033 0 88 3 572 1 0.112518
SE_01_06000104 chr1 205262498 205271886 0 59 0 347 3 0.0481898
SE_01_06000105 chr1 156642264 156648434 0 27 0 518 1 0.130146
SE_01_06000106 chr19 45348113 45353187 0 28 0 150 1 0.0515507
SE_01_06000107 chr3 50296642 50307364 0 56 2 475 3 0.0977288
SE_01_06000108 chr14 21993126 22005828 0 70 0 376 2 0.160643
SE_01_06000109 chr11 16625130 16630451 0 51 1 354 1 0.230422
SE_01_06000110 chr10 80915888 80921107 0 35 0 263 1 0.000338692
SE_01_06000111 chr5 139028038 139040044 0 32 0 294 2 0.153329
SE_01_06000112 chr1 36838564 36853621 0 39 1 312 2 0.104302
SE_01_06000113 chr1 46766392 46770289 0 99 1 427 1 0.128437
SE_01_06000114 chr19 39892158 39901643 0 23 0 136 2 0.0829953
SE_01_06000115 chr14 101296090 101308120 0 61 0 294 2 0.0395887
SE_01_06000116 chr16 29295654 29304871 0 54 1 643 3 -0.0103259
SE_01_06000117 chr1 82265334 82270085 0 50 0 179 1 0.11916
SE_01_06000118 chr3 126702370 126714514 0 10 0 19 2 0.0412526
SE_01_06000119 chr2 87300630 87305207 0 48 1 479 1 0.0497122
SE_01_06000120 chr2 86945765 86950342 0 50 1 441 1 0.0725018
SE_01_06000121 chr9 102580756 102587309 0 70 1 494 1 0.242101
SE_01_06000122 chr2 222433984 222439144 0 43 0 229 1 0.0946844
SE_01_06000123 chr15 69109147 69114466 0 52 1 489 1 0.235174
SE_01_06000124 chr21 46839397 46851395 0 32 1 242 2 -0.116131
SE_01_06000125 chr22 50344172 50356161 0 12 0 400 2 -0.0552836
SE_01_06000126 chr1 149821356 149826366 0 32 1 240 1 0.0577182
SE_01_06000127 chr3 119811629 119815489 0 39 1 231 1 0.167283
SE_01_06000128 chr8 77592477 77601080 0 160 3 801 2 0.359113
SE_01_06000129 chr17 79314942 79321211 0 65 0 369 3 0.0329334
SE_01_06000130 chr9 109621884 109627427 0 74 1 400 2 0.400784
SE_01_06000131 chr16 88291956 88301203 0 43 1 382 3 -0.036645
SE_01_06000132 chr1 149810579 149815407 0 35 1 254 1 0.0757529
SE_01_06000133 chr1 2474447 2481583 0 44 1 448 2 -0.0319866
SE_01_06000134 chr2 65657324 65665562 0 57 1 313 2 0.185922
SE_01_06000135 chr11 118780010 118788654 0 33 0 236 2 0.213174
SE_01_06000136 chr2 111098644 111107224 0 17 1 194 3 -0.00894061
SE_01_06000137 chr1 41951040 41963364 0 38 1 321 2 0.0567246
SE_01_06000138 chr2 110779320 110787669 0 19 1 245 3 -0.00198611
SE_01_06000139 chr13 95359253 95366692 0 57 1 191 2 0.232977
SE_01_06000140 chr12 46764497 46778190 0 65 2 310 2 0.0851932
SE_01_06000141 chr9 139461913 139467878 0 14 0 72 2 -0.0781158
SE_01_06000142 chr12 57022476 57030956 0 34 1 312 2 0.174142
SE_01_06000143 chr16 58528379 58536342 0 55 0 423 2 0.0523742
SE_01_06000144 chr6 86350321 86354623 0 46 2 356 1 0.161018
SE_01_06000145 chr3 66021408 66025959 0 38 0 335 1 0.104559
SE_01_06000146 chr2 132247803 132251958 0 40 2 360 1 -0.0393036
SE_01_06000147 chr12 6444627 6451862 0 32 0 427 2 0.0660237
SE_01_06000148 chr14 100680065 100691022 0 32 0 112 2 0.0234372
SE_01_06000149 chr10 77158317 77165154 0 28 1 112 2 0.280153
SE_01_06000150 chr19 14313394 14319856 0 34 1 243 2 0.0860918
SE_01_06000151 chr14 23448896 23452633 0 18 0 44 1 0.202181
SE_01_06000152 chr11 309921 319860 0 20 1 124 2 -0.0387645
SE_01_06000153 chr2 130937863 130942032 0 40 1 569 1 -0.0249038
SE_01_06000154 chr1 156716018 156721361 0 41 0 225 1 0.158422
SE_01_06000155 chr19 12893086 12905358 0 57 2 352 2 0.144035
SE_01_06000156 chr19 2543153 2557005 0 57 1 370 3 -0.0675547
SE_01_06000157 chr2 129125856 129137762 0 37 3 325 2 -0.0379018
SE_01_06000158 chr5 137087665 137091144 0 45 0 200 1 0.241005
SE_01_06000159 chr17 29033751 29039937 0 31 1 190 2 0.0406765
SE_01_06000160 chr14 100130353 100140037 0 52 0 135 2 -0.00858162
SE_01_06000161 chr15 63333543 63338496 0 55 1 375 1 0.182158
SE_01_06000162 chr1 202774940 202781425 0 32 2 112 2 0.122145
SE_01_06000163 chr9 137266362 137277377 0 14 0 64 2 -0.0786476
SE_01_06000164 chr9 3524423 3528009 0 46 1 237 1 0.172352
SE_01_06000165 chr18 3449689 3454082 0 36 1 320 1 0.0903532
SE_01_06000166 chr6 33172098 33177471 0 39 2 152 1 0.211261
SE_01_06000167 chr6 114176418 114180893 0 109 0 251 1 0.256436
SE_01_06000168 chr6 21586915 21597429 0 66 2 517 2 0.171288
SE_01_06000169 chr3 61545598 61550960 0 46 1 432 1 0.113569
SE_01_06000170 chr11 75271433 75276615 0 36 0 343 1 0.0958291
SE_01_06000171 chr11 61581754 61585760 0 51 0 219 1 0.0135666
SE_01_06000172 chr1 155162914 155167517 0 26 0 233 1 0.176126
SE_01_06000173 chr22 22005130 22013146 0 44 2 446 2 0.0415062
SE_01_06000174 chr12 6640997 6645329 0 34 0 208 1 0.0777178
SE_01_06000175 chr4 62065334 62070417 0 55 3 225 1 0.164201
SE_01_06000176 chr2 170216997 170221503 0 35 2 176 1 0.161318
SE_01_06000177 chr3 71629949 71634408 0 100 2 537 1 0.245081
SE_01_06000178 chr1 204042534 204053960 0 13 0 280 2 0.0846729
SE_01_06000179 chr12 89743903 89748784 0 63 2 159 1 0.223121
SE_01_06000180 chr3 150125121 150129324 0 31 0 207 1 0.302222
SE_01_06000181 chr1 155944401 155949670 0 34 1 226 1 0.172058
SE_01_06000182 chr5 107003930 107009658 0 90 2 461 2 0.177312
SE_01_06000183 chr19 50832707 50837733 0 48 1 292 1 0.0496249
SE_01_06000184 chr17 1616867 1621427 0 38 0 209 1 0.199493
SE_01_06000185 chr9 34578050 34591884 0 45 0 254 2 0.173516
SE_01_06000186 chr7 1703203 1711454 0 14 0 283 3 0.0293982
SE_01_06000187 chr18 25754844 25757770 0 47 2 291 1 0.112478
SE_01_06000188 chr15 30916323 30919933 0 36 1 233 1 0.0344512
SE_01_06000189 chr12 31476078 31480061 0 48 3 325 1 0.208418
SE_01_06000190 chr17 36610355 36622189 0 20 0 221 2 0.0795898
SE_01_06000191 chr1 100816342 100820083 0 58 2 356 1 0.0974196
SE_01_06000192 chr17 7744277 7748672 0 24 0 293 1 0.134022
SE_01_06000193 chr19 2269090 2272418 0 30 1 201 1 -0.017065
SE_01_06000194 chr19 48110650 48114020 0 59 2 201 1 0.0864787
SE_01_06000195 chr19 46269481 46274892 0 18 0 102 2 0.199382
SE_01_06000196 chr9 139225734 139238622 0 12 0 75 2 -0.0504415
SE_01_06000197 chr10 21795060 21800391 0 80 2 305 1 0.244811
SE_01_06000198 chr5 90675178 90680144 0 152 3 586 1 0.199894
SE_01_06000199 chr12 4380989 4385154 0 74 0 556 1 0.212832
SE_01_06000200 chr1 155051463 155058610 0 15 0 93 2 0.220231
SE_01_06000201 chr2 145272659 145282658 0 96 1 498 3 0.328481
SE_01_06000202 chr10 102756612 102761148 0 31 0 224 2 0.158417
SE_01_06000203 chr17 47090224 47101089 0 69 0 718 2 0.0569057
SE_01_06000204 chr19 1393954 1409783 0 12 1 56 2 -0.0278306
SE_01_06000205 chr1 149801834 149805766 0 58 2 372 1 0.0312041
SE_01_06000206 chr15 67355881 67361036 0 38 0 267 2 0.17686
SE_01_06000207 chr1 149831179 149834624 0 56 2 370 1 0.0403517
SE_01_06000208 chr17 55603532 55616432 0 124 0 485 2 0.0723561
SE_01_06000209 chr1 3228889 3241319 0 24 0 314 2 -0.00799492
SE_01_06000210 chr17 7107168 7119580 0 29 0 192 2 0.150771
SE_01_06000211 chr17 79066934 79071880 0 11 0 59 1 -0.0849264
SE_01_06000212 chr1 156673127 156678807 0 14 0 205 1 0.10501
SE_01_06000213 chr12 58237984 58241309 0 22 0 110 1 0.174278
SE_01_06000214 chr4 140096824 140100236 0 20 0 374 1 0.161822
SE_01_06000215 chr5 139075612 139090789 0 55 1 245 2 0.112718
SE_01_06000216 chr14 104007178 104011737 0 30 0 203 1 -0.027497
SE_01_06000217 chr3 3839897 3844259 0 39 0 245 1 0.0817781
SE_01_06000218 chr9 132165698 132178195 0 49 0 419 2 -0.0129041
SE_01_06000219 chr1 39567981 39573488 0 47 0 595 2 0.214691
SE_01_06000220 chr3 184280069 184288237 0 30 1 450 2 0.114607
SE_01_06000221 chr10 17269676 17272958 0 57 0 141 1 0.155714
SE_01_06000222 chr5 124078147 124085526 0 104 3 415 2 0.354116
SE_01_06000223 chr5 60624589 60630635 0 94 2 836 2 0.12397
SE_01_06000224 chr16 51182858 51187528 0 96 0 315 1 0.157413
SE_01_06000225 chr15 75938786 75944889 0 31 0 322 2 0.189981
SE_01_06000226 chr5 77163 83476 0 63 0 126 2 -0.0641833
SE_01_06000227 chr1 68150795 68153007 0 23 0 336 1 0.127777
SE_01_06000228 chr5 115907407 115911130 0 114 1 364 1 0.204241
SE_01_06000229 chr10 80937420 80945093 0 46 0 199 2 0.071682
SE_01_06000230 chr5 98104544 98111094 0 34 1 499 2 0.0981249
SE_01_06000231 chr12 121960751 121976885 0 38 3 385 3 0.0382701
SE_01_06000232 chr2 47401859 47405927 0 92 2 499 1 0.10455
SE_01_06000233 chr17 18313492 18316639 0 41 1 190 1 -0.0434239
SE_01_06000234 chrX 34671827 34675569 0 63 2 409 1 0.157955
SE_01_06000235 chr9 136843892 136857035 0 8 0 18 2 -0.0681472
SE_01_06000236 chr15 75989849 75997362 0 13 0 89 2 0.00691907
SE_01_06000237 chr12 52230052 52242394 0 18 0 121 2 0.0842311
SE_01_06000238 chr17 20434434 20437559 0 45 1 317 1 -0.0668092
SE_01_06000239 chr4 1034432 1041223 0 15 0 65 3 -0.0634405
SE_01_06000240 chr4 30718726 30724161 0 25 0 198 1 0.196733
SE_01_06000241 chr6 151034040 151043238 0 122 4 755 2 0.0749699
SE_01_06000242 chr1 109796514 109803885 0 20 1 184 2 0.117351
SE_01_06000243 chr1 36619946 36623812 0 22 0 247 1 0.143889
SE_01_06000244 chr7 23507134 23515074 0 90 3 473 2 0.164603
SE_01_06000245 chr9 131901539 131908951 0 43 1 275 3 0.0504675
SE_01_06000246 chr6 128839712 128842774 0 30 0 575 1 0.130194
SE_01_06000247 chr7 20824002 20828146 0 67 3 263 1 0.234924
SE_01_06000248 chr4 187643857 187648376 0 101 2 277 1 0.0410246
SE_01_06000249 chr8 26305303 26308560 0 22 1 91 1 -0.041376
SE_01_06000250 chr17 75367844 75372596 0 23 0 149 1 0.039321

Master TFs Network

CRC model in Sample_01_060