General Details

Sample Id:Sample_01_030
Genome:Homo sapiens-hg19
Series: GSE29611 GSE29611
Biosample Type:Cell line
Tissue Type:Haematopoietic and lymphoid tissue blood
Sample Name:GM12878
PMID: 22955616|
Data Source:ENCODE

Software and Parameters Used

Read Mapping:Bowtie (version 0.12.9)
parameters,-e 70 -k 2 -n 2 -m 2 -S -q.
Peak Calling:MACS (version 1.4.2)
parameters,-p 1e-9 -w -S --keep-dup=auto --wig --single-profile --space=50.
Stitching Distance:12.5 kb
TSS Exclusive Zone:+/- 2 kb

Super-enhancer Table



Using these SE regions to analyze by online tools GREAT
SE ID Chrome Start End TF Identified by ChIP-seq TF Predicted by Motif Master TF Pathway Element Conservation Visualization
SE_01_03000001 chr2 33141125 33141829 69 19 3 1438 1 NA
SE_01_03000002 chr14 22916422 23039418 96 212 4 3462 15 0.114566
SE_01_03000003 chr6 286199 358301 94 172 5 3148 8 -0.0247187
SE_01_03000004 chr12 11856069 11937430 83 166 6 2829 11 0.0717261
SE_01_03000005 chr9 132745933 132808527 78 181 4 2765 6 0.023453
SE_01_03000006 chr12 92792239 92901146 86 194 4 3015 12 0.0359417
SE_01_03000007 chr3 98243833 98293620 87 156 6 2639 6 0.0681047
SE_01_03000008 chr17 76683277 76779181 89 188 7 3158 15 0.0281125
SE_01_03000009 chr14 106024484 106055736 89 119 5 2680 4 -0.0330853
SE_01_03000010 chr14 106144898 106176447 78 122 4 2367 5 -0.0296562
SE_01_03000011 chrX 12964714 13049247 95 190 5 3350 13 0.0436647
SE_01_03000012 chr1 111734335 111769737 85 125 4 2777 2 0.0584902
SE_01_03000013 chr16 81807751 81876993 88 190 4 3148 13 -0.0358959
SE_01_03000014 chr18 60798304 60903051 92 166 5 2866 15 0.0587904
SE_01_03000015 chr14 91781468 91885461 86 203 4 2904 16 -0.00787745
SE_01_03000016 chr3 170951398 171070237 72 175 5 2726 20 0.0428333
SE_01_03000017 chr2 231807659 231852351 88 112 5 2293 4 -0.00921229
SE_01_03000018 chr5 150438222 150538895 92 179 5 3206 13 0.0450295
SE_01_03000019 chr17 56405086 56424100 86 86 4 2168 1 0.104782
SE_01_03000020 chr14 68714420 68781716 85 146 3 2797 12 0.114893
SE_01_03000021 chr9 114731582 114841065 88 156 4 3111 16 0.0349556
SE_01_03000022 chr2 99060548 99109592 84 148 5 2611 8 0.0316961
SE_01_03000023 chr5 118643152 118735373 83 140 4 2853 14 0.0731244
SE_01_03000024 chr3 111830815 111856775 79 88 4 2030 1 0.0370197
SE_01_03000025 chr8 6563238 6608928 85 121 4 2155 7 0.0190694
SE_01_03000026 chr4 185230731 185277364 87 146 5 2707 3 -0.0195649
SE_01_03000027 chr15 74665944 74727178 84 153 5 2985 8 0.0535611
SE_01_03000028 chr10 97501453 97556515 87 106 4 2360 7 0.0841546
SE_01_03000029 chr17 2117059 2171888 90 118 5 2495 8 0.0816803
SE_01_03000030 chr9 36987528 37038110 86 140 4 2696 7 0.119112
SE_01_03000031 chr1 160673364 160760985 94 155 5 2623 10 0.0287845
SE_01_03000032 chr7 55571758 55641035 82 147 4 2736 13 -0.00351192
SE_01_03000033 chr4 185184226 185211028 84 106 3 2250 3 -0.0263565
SE_01_03000034 chr4 40174653 40211584 80 101 4 1769 4 0.0126601
SE_01_03000035 chr4 186224911 186283990 75 103 3 2046 7 0.0125055
SE_01_03000036 chr15 67358139 67443262 84 161 5 2622 13 0.0427789
SE_01_03000037 chr1 235060761 235124355 88 145 4 2812 9 0.0331319
SE_01_03000038 chr2 54784598 54832885 77 115 3 1764 8 0.0808627
SE_01_03000039 chr8 27206289 27263300 79 150 5 2411 8 0.0146211
SE_01_03000040 chr15 91191360 91237051 84 109 4 2483 6 0.0115913
SE_01_03000041 chr17 16849975 16895464 82 132 5 2387 9 -0.0013623
SE_01_03000042 chr1 101822390 101877765 79 114 4 1891 9 0.0310282
SE_01_03000043 chr1 31203109 31239740 83 131 4 2584 3 0.00734656
SE_01_03000044 chr2 233924068 233967296 81 112 4 1903 9 0.00645616
SE_01_03000045 chr14 70078341 70163889 80 154 6 2952 10 0.0621385
SE_01_03000046 chr2 172164128 172205420 77 100 4 2390 7 0.114803
SE_01_03000047 chr8 128190715 128239822 86 104 3 2042 8 0.0331991
SE_01_03000048 chr3 141079509 141132310 83 138 5 2494 8 0.140823
SE_01_03000049 chr18 56192223 56233188 79 104 5 2376 6 0.0253835
SE_01_03000050 chr2 62514751 62592658 79 125 5 2414 13 0.0452225
SE_01_03000051 chr15 45001403 45030225 90 105 3 2611 4 0.0607725
SE_01_03000052 chr8 101503298 101555976 88 103 5 2726 5 0.0678833
SE_01_03000053 chr6 34605837 34649838 82 101 4 2046 7 0.0655676
SE_01_03000054 chr1 160574859 160656179 85 136 5 2488 11 0.0444651
SE_01_03000055 chr20 52194984 52241155 82 122 4 2231 4 0.0612225
SE_01_03000056 chr2 68589026 68669230 92 134 3 2473 8 0.035415
SE_01_03000057 chr10 22885564 23013634 89 177 6 2976 20 0.0316904
SE_01_03000058 chr6 137070618 137115419 83 121 3 2198 4 0.0759091
SE_01_03000059 chr15 86229857 86264940 71 127 4 1926 5 0.0468986
SE_01_03000060 chr1 66796868 66868912 86 118 4 2533 9 0.0526143
SE_01_03000061 chr8 11336753 11368346 82 134 4 2410 5 -0.0308437
SE_01_03000062 chr17 75416367 75470803 84 130 5 2415 7 -0.0214143
SE_01_03000063 chr12 92930999 92964416 85 96 4 1883 5 0.0206348
SE_01_03000064 chr10 11238010 11329566 79 145 3 2473 11 -0.0196659
SE_01_03000065 chr20 37432843 37522706 84 143 4 2435 13 0.0730512
SE_01_03000066 chr12 129276468 129326594 86 122 3 2464 5 -0.0361793
SE_01_03000067 chr1 203242114 203298012 87 111 5 2652 8 0.0463809
SE_01_03000068 chr5 142584082 142612017 84 96 4 2139 4 0.0691146
SE_01_03000069 chr2 134952238 135053197 79 144 4 2180 14 0.0521693
SE_01_03000070 chr1 117080479 117114839 76 99 4 2159 5 0.0486123
SE_01_03000071 chr10 112600458 112635432 87 143 5 2365 5 0.0860093
SE_01_03000072 chr11 65170633 65225494 88 150 4 2603 5 0.014469
SE_01_03000073 chr2 65140175 65175312 87 104 5 1884 5 0.0415092
SE_01_03000074 chr6 209020 236995 86 91 3 2274 4 -0.0782728
SE_01_03000075 chr8 72740213 72777115 82 108 3 2350 5 0.0573469
SE_01_03000076 chr14 74207724 74255513 87 138 5 2937 7 0.0967853
SE_01_03000077 chr1 12099031 12149234 91 141 6 2942 10 0.00297463
SE_01_03000078 chrX 13091894 13112254 75 103 4 1968 1 0.0612395
SE_01_03000079 chr6 143159137 143209300 81 119 3 2660 5 0.108989
SE_01_03000080 chr12 125384779 125426012 92 94 3 2733 5 0.00189552
SE_01_03000081 chr11 65238729 65275589 89 107 4 2128 7 0.0349602
SE_01_03000082 chr8 101440268 101490644 84 140 3 2682 8 0.0468094
SE_01_03000083 chr20 46062043 46138742 89 127 5 2931 14 0.0184468
SE_01_03000084 chr3 186703420 186763271 82 135 5 2454 11 0.0270165
SE_01_03000085 chr14 103220418 103291592 84 159 4 2853 16 0.01436
SE_01_03000086 chr6 32554091 32608295 88 92 3 2456 5 -0.0167396
SE_01_03000087 chr2 37842951 37900371 85 167 5 2833 8 0.0733259
SE_01_03000088 chr1 248590729 248617227 56 62 4 1990 6 -0.0704663
SE_01_03000089 chr17 5100886 5159121 88 109 4 2357 9 0.0153893
SE_01_03000090 chr6 113946330 113984360 80 113 4 2508 5 0.0156173
SE_01_03000091 chr1 25345116 25364243 84 92 4 2658 3 0.0156402
SE_01_03000092 chr3 127447637 127500022 79 108 3 1901 9 0.00422667
SE_01_03000093 chr14 65748407 65789539 75 100 5 2025 9 0.0329828
SE_01_03000094 chr6 15287211 15367137 80 175 4 2385 17 -0.010519
SE_01_03000095 chr19 44248784 44289624 89 97 3 2278 6 0.0539328
SE_01_03000096 chr17 57902140 57927090 79 80 4 1849 2 0.0771634
SE_01_03000097 chr11 72850206 72870972 86 103 3 2337 3 0.122615
SE_01_03000098 chr1 248801433 248827871 46 56 2 1593 6 -0.0603297
SE_01_03000099 chr13 41534853 41593864 75 107 3 1920 9 0.06336
SE_01_03000100 chr1 40839328 40870792 81 108 4 2146 9 0.103483
SE_01_03000101 chr2 201980274 201998445 81 85 5 2279 1 0.0403553
SE_01_03000102 chr12 7045707 7071897 93 114 5 2922 3 0.0623555
SE_01_03000103 chr2 214090515 214109930 77 78 3 2322 1 0.0761169
SE_01_03000104 chr2 85115439 85174635 91 122 3 2686 9 0.0320515
SE_01_03000105 chr17 37909229 37958169 80 129 4 2530 6 0.128395
SE_01_03000106 chr10 89821291 89879320 85 112 4 2448 10 0.0903757
SE_01_03000107 chr6 137414187 137446353 80 83 3 1785 4 0.0356773
SE_01_03000108 chr6 16470161 16513379 81 66 3 2125 8 0.0943736
SE_01_03000109 chr1 112134511 112172868 80 93 5 2191 6 0.0935053
SE_01_03000110 chr13 99922107 99985376 78 106 3 1864 10 0.066389
SE_01_03000111 chr2 33699660 33727546 74 83 3 1777 5 0.0375402
SE_01_03000112 chr6 41671775 41703534 83 118 5 2325 4 0.0651221
SE_01_03000113 chr22 23269775 23286237 86 80 3 2237 1 -0.0404667
SE_01_03000114 chr9 123681308 123707851 76 78 4 2517 2 0.0817207
SE_01_03000115 chr5 131745386 131775455 76 125 3 2316 3 0.0802285
SE_01_03000116 chrX 1585639 1657050 86 124 5 2188 12 -0.0765779
SE_01_03000117 chr13 42942280 42989084 84 97 4 2346 6 0.0676404
SE_01_03000118 chr1 221880777 221953221 86 130 4 2617 11 0.0527807
SE_01_03000119 chr11 121315348 121366306 77 94 5 2105 4 0.06835
SE_01_03000120 chr6 37514664 37534283 78 79 4 2351 3 0.0252669
SE_01_03000121 chr1 207080006 207105646 84 58 4 2069 3 0.0112172
SE_01_03000122 chr15 75068733 75092725 87 123 4 2647 3 0.080206
SE_01_03000123 chr9 117126175 117160872 82 97 6 2369 4 0.0368678
SE_01_03000124 chr2 197239826 197318508 80 125 4 2628 9 0.0446362
SE_01_03000125 chr1 167585671 167651269 76 106 6 2567 11 0.0481471
SE_01_03000126 chr10 11204392 11223163 82 76 3 2258 1 0.0220957
SE_01_03000127 chr20 52507888 52566628 84 129 4 2375 10 0.0338145
SE_01_03000128 chrX 19746521 19830839 67 172 6 2451 15 0.0817554
SE_01_03000129 chr10 32258812 32259170 17 9 2 454 1 NA
SE_01_03000130 chr10 63719188 63783481 77 127 4 1985 7 0.143359
SE_01_03000131 chr20 52301849 52371855 89 88 3 2137 8 0.0143279
SE_01_03000132 chr3 46966484 47033361 91 132 5 2776 10 0.056878
SE_01_03000133 chr2 231429095 231480455 85 120 4 2309 7 -0.00867803
SE_01_03000134 chr9 134579519 134615485 72 116 3 2065 3 0.0294263
SE_01_03000135 chr16 27377919 27421729 93 131 5 3276 5 0.0142317
SE_01_03000136 chr21 45557261 45596609 58 124 4 2150 8 -0.0795373
SE_01_03000137 chr1 150532773 150553194 84 92 4 2208 4 0.0768528
SE_01_03000138 chr12 108934048 108970599 87 130 5 2751 5 0.0658193
SE_01_03000139 chr18 57528939 57596066 89 148 6 2872 11 0.0105542
SE_01_03000140 chr17 43361254 43411607 85 136 4 2411 9 0.0658938
SE_01_03000141 chr3 13035895 13065120 80 119 5 2579 5 0.0139173
SE_01_03000142 chr3 178230110 178265092 61 70 3 1382 4 0.0558363
SE_01_03000143 chr10 97576770 97602303 85 77 3 2026 2 0.0924957
SE_01_03000144 chr5 139013545 139051996 85 139 6 2607 7 0.144117
SE_01_03000145 chr15 63764670 63828765 86 117 3 2524 11 0.0727411
SE_01_03000146 chr20 47353936 47407756 83 125 3 2070 7 0.0138965
SE_01_03000147 chr12 102302186 102345972 84 84 4 2437 6 0.0339324
SE_01_03000148 chr2 25622233 25654892 85 89 4 2281 4 0.0549696
SE_01_03000149 chr19 6575709 6609789 98 80 3 2710 4 -0.0148406
SE_01_03000150 chr1 32377643 32428372 86 104 4 2397 7 0.0847721
SE_01_03000151 chr11 64618063 64648991 85 118 4 2525 6 0.0320543
SE_01_03000152 chr22 50966978 50983510 82 84 4 2621 3 -0.0174461
SE_01_03000153 chr10 74006814 74059404 95 125 4 3030 7 0.0547063

Master TFs Network

CRC model in Sample_01_030