SEanalysis

Databases Select All
KEGG	NetPath	Reactome	WikiPathways	PANTHER
PID	HumanCyc	CTD	SMPDB	INOH

Genes

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Threshold

FDR Adjust

GeneNumber
Min:

Max:

Tissue Type :

SE-Gene Linking Strategies :

Fimo:

TF Class :

Function introduction Guidance
If users input an gene set (gene symbol), SEanalysis will identify enriched pathways^① in up to 10 pathway databases, SEs^③ bound by terminal TFs^② of these pathways and SE-associated genes^④.
1) Databases: Select at least one database of pathways.
2) Genes: Input a gene symbol set.
3) Threshold: Set P-Value and FDR thresholds.
4) GeneNumber: Limit the number range of genes in pathways.
5) Tissue Type: Select one sample tissue type or all.
6) SE-Gene Linking Strategies: Select different annotation strategies to link SEs with target genes.
7) Fimo: Set different statistical thresholds to control for false positivity.
8) TF Class: Select at least one classification.