SEanalysis

Genomic region annotation

Paste your data:
Upload a file:
Region definitions are ordinary 3-field bed file format. For example:
chr11 65239110 65264640
chr19 13947194 13962421
chr19 39888494 39901409
chr1 30649567 30655759
chr1 11345200 11359618
Information about UCSC BED format

Tissue Type :

SE-Gene Linking Strategies :

Fimo:

Pathway Enriciment Threshold :

FDR Adjust

Function introduction Guidance
Users can upload a ‘bed’ format file or a region list to identify SEs^③ overlapping the queried regions, genes^④ associated with these SEs, TFs^② binding to these SEs and their upstream pathways^①.
1) Tissue Type: Select one sample tissue type or all.
2) SE-Gene Linking Strategies: select different annotation strategies to link SEs with target genes.
3) Fimo: Set different statistical thresholds to control for false positivity.
4) Pathway Enriciment Threshold: Set a statistical significance threshold of pathway enrichment, which is calculated using hypergeometric test.

Minimum percentage of overlap : % _{(If not, the default value is 50%.)}
Applied on our catalog of peaks
Applied on your submitted regions
Apply the minimum percentage of overlap on both data _{(our catalog of peaks and your submitted regions)}